. APOE4/4 is linked to damaging lipid droplets in Alzheimer's microglia. 2023 Jul 25 10.1101/2023.07.21.549930 (version 1) bioRxiv.


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  1. Haney et al. and Prakash et al. focus on a little-studied attribute of the AD brain, i.e., the accumulation of lipids in glia, and their potential mechanistic role in neuronal cell death. As a rationale for their work, Haney et al. cite Alois Alzheimer’s original histopathologic observation that “many glial cells show adipose saccules.” Prakash et al. point out that the hallmark AD feature (Aβ accumulation in plaque) has had setbacks as a sole explanation of cognitive decline in AD, and point to “reactive microglia [which] cluster around Aβ plaques” as a point of interest.

    Both groups then characterize a subset of microglia that accumulate LDs, and which associate in proximity with Aβ plaques, with Prakash et al. using the 5xFAD mouse model together with human brain tissue, while Haney et al. use human AD postmortem tissue. Using transcriptomics, and a comparison of AD brains, Haney showed higher expression of the ACSL1 gene in AD versus age-matched controls, and in AD APOE4 homozygotes versus AD APOE3 homozygotes. Using immunohistochemistry, they also show that not only ACSL1 gene expression, but also the ACSL1 protein, is upregulated in AD brain, and more so in APOE4 than in APOE3 carriers. ACSL1 expression was specific to “lipid droplet accumulating microglia (LDAM)” which they define as a distinct microglial state. As ACSL1 is a regulator of lipid metabolism, Haney et al. suggest that it is responsible for increased microglial lipid droplet accumulation and triglyceride synthesis.

    Prakash et al. show that LD-rich microglia are associated in proximity to Aβ plaques in both the mouse model and in human brain tissue. Using lipidomic and metabolomic profiling, they identify changes to a diversity of lipids and metabolic pathways, which they suggest account for the LD-laden microglial phenotype. They show a decrease in free fatty acids together with an increase in triglycerides. They attribute this to the enzyme DGAT2, which converts free fatty acids to triglycerides.

    Furthermore, Prakash et al. identified an interesting conundrum—that direct exposure of microglia from wild-type mice to a fluorescent-labelled Aβ (AβpH) increased LD content by 4.5-fold, but microglia from 5xFAD mice had no significant LD increase.

    While the two groups use contrasting study designs, both contain a rich array of observational and functional experiments, showing dysregulation of lipid metabolism, increased TG levels, and changes to the expression of lipid regulating genes and proteins in AD, which likely account for the LDAM phenotype. Both relate the formation of LD-rich microglia to the effects of aberrant Aβ forms; fibrillar Aβ (Haney et al.) and Aβ1-42 (Prakash et al.). Interestingly, each team comes to somewhat different conclusions about the neuropathological implications of the LDAM phenotype. Prakash et al. suggest that LD-rich microglia are impaired in their ability to uptake the toxic Aβ1-42 variant, while Haney et al. suggest that LD accumulation in glia leads to glial secretion of neurotoxic factors.

    In aggregate, these findings bring into sharp focus the mechanisms underlying Alzheimer’s original observation of lipid accumulation in microglia, which has had relatively scant attention to date. Both show a dysregulation of lipid metabolism; this is likely due to enzymes involved, such as ACSL1 and DGAT2, but likely also other enzymes responsible for lipid expression and turnover.

    These studies open the door for additional work to address questions such as:

    (a) Specifically, which forms of Aβ can cause microglial AD accumulation? The current work suggests fibrillar Aβ and Aβ1-42, but what about Aβ1-40, which can also aggregate (Vander Zanden et al., 2019) and is the predominant version in cerebral amyloid angiopathy. Or what about monomeric versus fibrillar Aβ forms, or indeed amyloid plaque, which has sometimes been considered an inert endpoint of AD?

    (b) How do LDAMs contribute to neuropathology? Is it by increasing toxicity, or by decreasing the ability of microglia to protect from toxic endogenous Aβ variants, or by some combination of both?

     (c) Are LDAMs an intermediate in the development and progression of AD, or could aberrant lipid metabolism be an AD trigger?

    (d) How early in the development and progression of AD do changes to lipid metabolism occur, and are they evident in both familial and idiopathic AD variants?

    (e) Is there an upper threshold of LD accumulation in cells, beyond which additional accumulation is not possible?

    (f) What are the specific mechanisms by which LDAM may affect neuronal integrity?

    (g) Lastly, that both AD homozygous APOE4 and APOE3 carriers have altered lipid metabolism relative to non-AD controls suggests that both genetic and lifestyle/environmental determinants can contribute to the LDAM phenotype. Non-genetic determinants suggest that there may be potential therapeutic or preventative options to be explored.


    . Fibrillar and Nonfibrillar Amyloid Beta Structures Drive Two Modes of Membrane-Mediated Toxicity. Langmuir. 2019 Dec 3;35(48):16024-16036. Epub 2019 Sep 26 PubMed.

    View all comments by Anne Poljak
  2. These two studies make it abundantly clear that lipid droplets modulate microglial function in AD models. Over the past decade, the research community has rediscovered the importance of lipid droplet pathology in AD, and has made considerable strides in delineating the mediators, modulators, and effects of these previously overlooked organelles.

    These preprints use an array of model systems—immortalized cell lines, human AD tissue, mouse models, human iPSC-derived microglia, mouse primary microglia. Haney and Palovics et al. focus on the role of human APOE isoforms, especially E4, on microglial LDs, whereas Prakash and Manchanda et al. use the familial AD mouse model 5xFAD to explore microglial LDs.

    Data from all these models across the two manuscripts converge on a key finding: that Aβ exposure induces LD formation in microglia, and that these lipid-laden microglia have an array of detrimental phenotypes. These range from proinflammatory states to reduced phagocytosis and damaged lysosomes, phenotypes that have been observed in other studies as well (Lee et al., 2023). Aβ-induced LDs occur in the context of LOAD (as modeled by APOE4) as well as in the context of familial AD (modeled by 5xFAD), providing another bridge (in addition to amyloid and tau) between the late-onset and inherited forms of the disease.

    For lipid afficionados, both preprints observe an increase of unsaturated triacylglycerides after 24 hours of Aβ exposure. This trend has been observed in multiple other contexts (Sienski et al., 2021; Windham et al., 2023). Prakash, Manchanda et al. explore the dynamics of this response by comparing acute (one hour) versus chronic exposure (24 hours); they observe a time-dependent change in both the saturation of fatty acids and storage of fatty acids in more complex lipids like TAGs and cholesterol esters. Haney and Palovics et al. focus on the 24-hour treatment paradigm. It is worth noting that the dose of amyloid used in Haney and Palovics et al. (5 μM) is 10 times that used in Prakash and Manchanda et al.

    Both papers use various methods to identify modulators of the lipid droplet. Haney and Palovics et al. use single-cell transcriptomics from human brains and iPSC-derived microglia as well as CRISPRi screens in monocyte cell lines and iPSC-derived microglia. These screens reveal two methods for modulating lipid droplet formation—decreasing ACSL1 (a fatty acid acylation enzyme) or increasing lipolysis (by broadly inhibiting PI3K signaling)—though it should be noted that these enzymes feed into other anabolic and catabolic pathways as well. Prakash and Manchanda et al. focus on DGAT2—which catalyzes the rate-limiting step in TAG synthesis—inhibition of which alleviates some aspects of microglial dysfunction. This effect seems to be dependent on the AD context, suggesting that other lipid modulators may also play a role.

    Both papers discover LD-containing microglia in the proximity of amyloid plaques, suggesting that these cells may have a role in responding, phagocytosing, or managing the growth and toxicity of plaques. Haney and Palovics et al. delve further into mechanisms of cell non-autonomous action. They report that conditioned media from microglia with high LD content can induce tau phosphorylation in iPSC-derived neurons. This builds on previous findings that aberrant lipid accumulation in APOE4 microglia can influence neuronal signaling (Victor et al., 2022). 

    After reading these preprints, I’d like to share these points with the community:

    1. Both papers center around TAGs rather than cholesterol esters (CEs), another key component of lipid droplets. Whether similar effects are achieved by changing CE storage should be explored. We know that CEs alter other AD-associated pathologies, such as tau accumulation (van der Kant et al., 2019). Perhaps modulating CE metabolism can give us complementary insights into the responses of microglia to Aβ.
    2. Both papers discuss the association of lipid accumulation with senescence in other cell types. Given the use of senolytics as tools and drugs, this may be an interesting angle for future exploration.
    3. Prakash and Manchanda et al. discuss how most of their phenotypes were clearer in female mice than males. Interestingly, the isogenic iPSC set used in Haney and Palovics’ manuscript is also female. Is there something about the female genetic background that increases susceptibility to, or the effects of, these lipid-based phenotypes? This is something for researchers to keep in mind when looking to reproduce others’ phenotypes.
    4. Prakash and Manchanda et al. analyze the effects of age on lipid droplet accumulation, noting that microglia isolated from young 5xFAD mice had similar LD content to their wild-type counterparts, whereas at 5 to 7 months of age, 5xFAD had far more LDs. It would be interesting to parse whether this effect was due to just accumulation of amyloid over time or something else.
    5. A question arising from a reading of the Haney and Palovics et al., work is how does APOE4 increase LD content—is it through active interactions with LD formation machinery, or changing of the lipidome, which can alter the distribution and function of lipids? A recent preprint suggested APOE may itself function as an LD protein (Windham et al., 2023), but it is unclear how this property is impacted by different APOE genotypes.
    1. What are the lipid droplets doing to cause microglial dysfunction? Is it through changes in LD proteome? Changes in levels of lipid precursors? Teasing out these mechanisms will give us a strong mechanistic understanding of the role of LDs in this devastating disease.

    Together, it is clear lipids in neurodegenerative disease have entered a new era of importance. However, there is still a long way to go to understand the mechanisms that govern their contribution to different cell types in the initiation and progression of the disease.


    . APOE modulates microglial immunometabolism in response to age, amyloid pathology, and inflammatory challenge. Cell Rep. 2023 Mar 28;42(3):112196. Epub 2023 Mar 3 PubMed.

    . APOE4 disrupts intracellular lipid homeostasis in human iPSC-derived glia. Sci Transl Med. 2021 Mar 3;13(583) PubMed.

    . APOE traffics to astrocyte lipid droplets and modulates triglyceride saturation and droplet size. 2023 Apr 29 10.1101/2023.04.28.538740 (version 1) bioRxiv.

    . Lipid accumulation induced by APOE4 impairs microglial surveillance of neuronal-network activity. Cell Stem Cell. 2022 Aug 4;29(8):1197-1212.e8. PubMed.

    . Cholesterol Metabolism Is a Druggable Axis that Independently Regulates Tau and Amyloid-β in iPSC-Derived Alzheimer's Disease Neurons. Cell Stem Cell. 2019 Mar 7;24(3):363-375.e9. Epub 2019 Jan 24 PubMed.

    View all comments by Priyanka Narayan
  3. Wyss-Coray and colleagues have identified a key regulator of lipid droplet (LD) biogenesis, ASCL1, activated specifically in microglia and in APOE4 human AD brain, then followed by triacylglycerol (TAG) synthesis and lipid droplet (LD) accumulation.

    In vitro, iPSC-derived APOE4 microglia continually accumulate LDs upon challenge with fibrils of Aβ. Interesting results from the study are that conditioned media from high-LD APOE4 microglia induce tau phosphorylation and neurotoxicity in neurons but not conditioned media from low-LD APOE4 microglia nor, tellingly, from high-LD APOE knockout microglia. This demonstrates that APOE4 has a toxic gain of function, regardless of the presence of high LD in microglia.

    Davalos, Chopra, and colleague have identified another key regulator of LD biogenesis in 5xFAD mice, DGAT2, also a part of the LD biogenesis pathway converting free fatty acids to TAGs. An interesting finding in this paper is that LD-laden microglia are in very close proximity to amyloid plaques, almost directly contacting Aβ, leading to a phagocytic defect. These authors further demonstrated that amyloid exposure is sufficient to induce microglial LD formation. Interestingly, a DGAT2 inhibitor does not reduce LD formation in microglia from 5xFAD upon Aβ exposure, but increases Aβ phagocytosis.

    In short, these studies found, in common, that both APOE4 and amyloid activate key regulators of LD biogenesis in microglia, revealing potential targets for AD therapeutic intervention.

    View all comments by Julia TCW
  4. This exciting pair of preprints explores the role of microglial lipid droplet accumulation in Alzheimer’s disease (AD) using complementary human and rodent model systems. Haney used AD brain tissue and human stem cell-derived microglia (iMG) and neurons, while Prakash, Chopra, and colleagues primarily used a mouse model of AD. Both found that microglia from AD brains had altered lipid metabolic profiles, with triglycerides accumulating in lipid droplets, especially in microglia close to amyloid plaques.

    Intriguingly, Haney et al. found that treating microglia with fibrillar Aβ induced lipid droplet formation in a genotype-dependent manner. APOE is a lipid-related AD risk gene, but how APOE genotype intersects with Aβ and tau to increase AD risk is unclear. Microglia expressing APOE4 accumulated more LDs in response to Aβ. Remarkably, these LD-high microglia released factors that induced hallmarks of AD pathology in cultured neurons. Media from LD-high microglia caused neurons to accumulate phosphorylated tau, while media from LD-low microglia did not. These experiments suggest that microglial APOE may act after Aβ and before tau in an amyloid-cascade model of AD.

    These experiments raise many questions about how Aβ causes lipid droplet accumulation in microglia, and how this accumulation, in turn, causes release of factors that induce tau pathology within neurons. The studies each identified enzymes involved in triglyceride synthesis as key players. Haney et al. identified expression of ACSL1 as the key feature of plaque-associated microglia, while Prakash et al. showed that DGAT2 was required for microglial lipid droplet accumulation. ACSL1 converts fatty acids into fatty acyl-CoAs. DGAT2 uses diacylglycerol and a fatty acyl-CoA to synthesize triglyceride. Thus, both these enzymes work at the last step of triglyceride synthesis.

    Excitingly, the two studies showed that reducing lipid droplets by inhibiting either PI3 kinase, or DGAT2, rescued multiple microglial phenotypes. Thus, this work opens new possibilities, suggesting that inhibiting triglyceride synthesis in microglia could be beneficial as part of a therapeutic strategy for AD.

    View all comments by Sarah Cohen
  5. My lab has had a continued interest in the cell-type-dependent impact of APOE4 expression across the brain, particularly as it relates to lipid metabolism in glia. We have previously created isogenic iPSC lines bearing either the disease-neutral allele APOE3, or the disease-associated allele APOE4, for phenotypic analysis (Lin et al., 2018). After deriving all major brain cell types from multiple APOE isogenic pairs, our study reported, amongst its many findings, that APOE4 astrocytes accumulated intracellular lipids, while APOE4 microglia exhibited hallmarks of inflammation and reduced Aβ phagocytosis (Lin et al., 2018). This led us to perform an in-depth characterization of lipid homeostasis in APOE4-bearing astrocytes, where we uncovered increased accumulation of unsaturated fatty acids and intracellular lipid droplets, both in APOE4-expressing human astrocytes and in an APOE4 yeast model (Sienski et al., 2021). Our study also demonstrated that exogenous choline supplementation was sufficient to reverse the APOE4-induced lipid defects.

    We have recently examined the consequences of APOE4 expression in iPS-derived microglia in crosstalk with neurons. We found that lipid-droplet accumulation is dramatically increased in APOE4 microglia, and that this disrupted microglial surveillance of neuronal secreted cues (Victor et al., 2022). In our study, we identified a metabolic switch in APOE4 that favored glycolysis instead of mitochondrial respiration and that primed these cells toward a pro-inflammatory state. Interestingly, we also found that lipid-burdened APOE4 microglia were marked by the upregulation of ACSL1 and that depleting lipid droplets with an ACSL1-specific inhibitor could restore microglia surveillance of neuronal activity. From RNA-Seq analysis, we found little overlap between the APOE4-induced state with the previously reported lipid droplet accumulating microglia (LDAM) profile. Phenotypically, LDAM exhibits reduced phagocytosis and increased secretion of pro-inflammatory cytokines, which is similar to the cellular state we have previously characterized in APOE4 bearing iPSC-derived microglia (Lin et al., 2018). But contrary to our findings with human APOE4 iMGLs, mouse LDAMs exhibit increased mitochondrial respiration. The poor convergence of transcriptional signatures between our human APOE4 iMGL and mouse LDAM may be due to a transcriptional program induced by Aβ exposure, such as demonstrated by Prakash and Manchanda et al. with 5XFAD mice, and Haney et al. with AŴ peptide treatment.

    Interestingly, we observed that prolonged exposure of APOE4 iMGLs to the ACSL1 inhibitor Triacsin C was cytotoxic and therefore unlikely to serve as a therapeutic agent. This is perhaps due to the importance of lipid droplets in buffering excess lipids associated with lipotoxicity. In fact, lipid droplets are thought to safeguard cells against various types of cellular stress (Jarc and Petan, 2019). Therefore, lipid accumulation influences many processes and must be fine-tuned rather than abrogated.

    The new findings by the Wyss-Coray lab and the Davalos and Chopra labs offer exciting new mechanisms (i.e., inhibition of PI3 kinase or DGAT2) to alleviate lipid burden in microglia, but the long-term impact of these manipulations must be first carefully assessed.


    . APOE4 Causes Widespread Molecular and Cellular Alterations Associated with Alzheimer's Disease Phenotypes in Human iPSC-Derived Brain Cell Types. Neuron. 2018 Jun 27;98(6):1141-1154.e7. Epub 2018 May 31 PubMed.

    . APOE4 disrupts intracellular lipid homeostasis in human iPSC-derived glia. Sci Transl Med. 2021 Mar 3;13(583) PubMed.

    . Lipid accumulation induced by APOE4 impairs microglial surveillance of neuronal-network activity. Cell Stem Cell. 2022 Aug 4;29(8):1197-1212.e8. PubMed.

    . Lipid Droplets and the Management of Cellular Stress. Yale J Biol Med. 2019 Sep;92(3):435-452. Epub 2019 Sep 20 PubMed.

    View all comments by Matheus Victor
  6. These interesting reports are a step forward. They suggest a functional link between ApoE and Aβ on the one hand, and phospho-tau, perhaps mediated by microglia-derived lipid droplets (LDs). It is possible that the light microscopic observation by Prakash et al. and Haney et al. of LDs in AD tissues are related to the extracellular droplets we observed intermingled with amyloid in tissues from a mouse model of AD (Leistner et al., 2003) and in post-mortem AD brain (Preprint: Gilbert et al., 2023). However, the size of the droplets observed by Prakash et al. and Haney et al. were 10- to 20-fold larger than those we observed by cryoET. This may be related to the resolution or sensitivity of light microscopy in detecting LDs. I suppose the choice of dyes to detect LDs is also important.

    I wonder if the LDs described by these authors were located extracellularly, as they appeared to be in our cryoET studies. Extracellular droplets we observed by cryoET also appeared to possess one of several distinct structures, including spherical and cuboid droplets, and these were not observed in control brain. In contrast, LDs observed by light microscopy (Haney et al., Fig 2a) were also present in control brain, albeit with lower prevalence than in AD brain. It would be interesting to understand these differences and delineate the molecular signatures that might differentiate putative LD and extracellular droplet types.

    Where is ApoE in all this? Is ApoE in close proximity to LDs, to extracellular droplets, or neither?


    . The in-tissue molecular architecture of β-amyloid pathology in the mammalian brain. Nat Commun. 2023 May 17;14(1):2833. PubMed.

    . In situ cryo-electron tomography of beta-amyloid and tau in post-mortem Alzheimer's disease brain. 2023 Jul 18 10.1101/2023.07.17.549278 (version 1) bioRxiv.

    View all comments by Rene Frank
  7. These two papers support accumulating literature reporting dysregulation of microglial lipid metabolism in Alzheimer’s disease human brain and mouse models.

    Prakash et al. showed LD formation in microglia in response to Aβ and corresponding increases in LDs in close proximity to plaques in human brain and in the 5xFAD mouse model of AD. Interestingly, LD formation was dependent on age and disease progression, and was prominent in the hippocampus, a pathologically vulnerable region in human and mouse brain. Prakash et al. showed that microglia with high LD load have deficits in phagocytosis, consistent with earlier findings that TREM2-deficient microglia failed to mount a functional immune response (Nugent et al., 2020). In that study, LD formation corresponded with an increase in cholesteryl ester formation and was shown to be dependent on apolipoprotein E4 (APOE) expression.

    Similarly, Prakash et al. showed an increase in lipid storage in Aβ-treated microglia in the form of increased tricylglycerol and DGAT2 levels. This corresponded with reduced phagocytic function and free fatty acids. However, the analysis of lipidomic data was based on relative lipid levels, so it is unknown to what extent the absolute lipid content had changed. Interestingly, inhibition of DGAT2, and hence the lipid dyshomeostasis, rescued the deficit in phagocytosis. It is not clear if DGAT2 inhibition also rescued the lipidomic profile that led to the functional changes, because lipidomic data in response to DGAT2 inhibition were not provided. Due to the interconnected nature of lipid metabolism and signaling pathways, it will be necessary to determine the precise changes across the lipidome after DGAT2 inhibition to identify specific lipid species associated with amelioration of phagocytosis deficits.

    Haney et al., identified an ACSL1-positive microglial state, which is most abundant in APOE4 carriers. They showed that fibrillar Aβ induction of triglyceride synthesis and of ACSL1 are dependent on APOE isoforms. This supports the critical role of APOE for mediating lipid storage and metabolism in response to pathological challenge. These authors further demonstrated that conditioned media from LD-rich microglia can induce tau phosphorylation and neurotoxicity. Further study is needed to identify the lipid and protein content of the secreted particles, be they exosomes, apolipoprotein particles, or other endogenous nanoparticle (eNP) culpable for these pathological effects.

    One remaining challenge facing both studies is to account for the response of microglia functional states after acute isolation protocols. It is clear that microglia are sensitive to the physical and chemical environment, resulting in different activation states. It is not clear to what extent the isolated microglia represent activated or homeostatic states in situ. The homeostatic state of iPSC-derived microglia (iMG) is currently under investigation. However, it is demonstrated in these, and other, papers that there are differences among the responses of microglia isolated from different ages, sexes, and disease states. Further studies of microglia and cell-type-specific lipid dysregulation in situ, using emerging spatial transcriptomics and spatial mass spectrometry imaging technologies, are necessary to determine ground-truth, disease-relevant microglial deficits. 

    Further, the mechanism by which Aβ peptides, oligomers, and/or fibrils stimulate changes in lipid metabolism and microglial function remains unclear. Since different oligomeric and fibrillar Aβ species have been reported to have different functional activities, it will be important to clarify which specific oligomer or aggregate may differentially affect LD formation, phagocytosis, tau-phosphorylation, and neurotoxicity.

    These studies highlight the association between lipid dysregulation and microglia dysfunction. This association remains correlative. The function of ApoE as a specific lipoprotein mediator of extracellular lipid transport and intracellular accumulation will need to be elucidated. Further mechanistic studies regarding the function of the dysregulated lipid species and their interactions with Aβ, and microglial function are critical for a full understanding of this interplay, which can help lead to more precise biomarkers and/or potential therapeutic targets in lipid metabolism.


    . TREM2 Regulates Microglial Cholesterol Metabolism upon Chronic Phagocytic Challenge. Neuron. 2020 Mar 4;105(5):837-854.e9. Epub 2020 Jan 2 PubMed.

    View all comments by Laura Beth McIntire
  8. Both studies, by Prakash et al. and Haney et al., found lipid droplet (LD)-rich microglia around Aβ plaques in relevant brain regions of AD, which impacts microglia function. Their studies suggest to the authors that reducing LD formation is a strategy to restore microglia function and decrease inflammation. However, LD formation serves as a mechanism to shield immune cell fatty acids from peroxidation during immune responses. The study of Haney et al. mentions scientific work (Bosch et al., 2020) that emphasizes LD formation in macrophages as an immunological mechanism to combat pathogens. Therefore, an effort to direct inhibition of LD formation in microglia raises questions about the microglia’s normal capacity to protect surrounding brain cells from stressors. Nevertheless, if LD-rich microglia result from a chronic maladaptive response, LD reduction or removal could hold significance. Furthermore, these changes observed in microglia are not specific to AD, as we have shown in Parkinson patient’s brain that microglia accumulate lipids chronically—and that such microglial LD-like changes can be duplicated in vivo in mice, by simply blocking lysosomal enzymes (Brekk et al., 2020). 

    The article by Haney et al. specifically investigated the ASCL1 gene's role in microglia and LD formation in the context of AD and the ApoE genotype. This study found that ASCL1 expression is elevated in postmortem prefrontal cortex microglia of AD patients, particularly in those with the ApoE4 allele. These ASCL1-positive microglia are rich in LDs and are found near Aβ plaques in the AD brain. Their further experiments involved exposing microglia, derived from different ApoE genotypes hIPSC, to Aβ fibrils (f-Aβ). This challenge leads to increased LDs and ASCL1 expression, more pronounced in ApoE4 microglia, reminiscent of the pattern observed in AD patients. The researchers identify a pro-inflammatory phenotype in LD-rich microglia. Neurons exposed to conditioned medium from LD-rich microglia show increased p-Tau levels, indicating neuronal stress. This effect was more significant with medium from ApoE4 microglia. In fact, a previous study about ASCL1 also reported this to be higher in E4 vs E3 human microglia (Victor et al., 2022). Pointing to a more general mechanism than Aβ toxicity, we also find that ASCL1 increases in human fibroblasts, together with increases of LDs, after inducing intracellular lipid and cholesterol accumulation in such cells (Di Biase et al., unpublished data). The Haney et al. study also investigated ApoE KO microglia, which did not exhibit the same LD increase in response to f-Aβ. However, It is not clear which is the specific inflammatory phenotype of stressed ApoE KO microglia. Additionally, the researchers highlight the possibility of lipid transfer from microglia to neurons, mediated by ApoE, but this hypothesis lacks conclusive evidence. In fact, normally astrocytes are the predominant lipid carrier for ApoE—and the article provides no direct data to support the lipid transfer from microglia, nor does the paper evaluate astrocyte function.

    The study by Prakash et al. concerns Aβ's impact on microglia and lipid profiles using the 5XFAD mouse model with relevant findings dependent on age and gender of mice. In “adult” (5- to 7-month-old) mice and AD patients, lipid-loaded microglia cluster around Aβ plaques. In female brain the effect was stronger than in male. The study further explored how Aβ affects microglia function. Specifically, in vitro, wt mouse microglia responded to aggregated Aβ by increasing lipid droplets and phagocytosis. However, 5XFAD microglia didn't respond similarly, for what was believed to be due to their prior in vivo Aβ exposure. DGAT2, an enzyme linked to lipid droplet formation, was elevated in the LD loaden microglia both in 5XFAD mice and AD patients. Inhibiting DGAT2 improved 5XFAD microglia phagocytosis. Unlike the Haney et al. study, the human ApoE genotype wasn't considered, and there's a lack of data on the inflammatory signature of Aβ-exposed microglia in the study. However, the article provides a lipidomic and metabolomic profile of 5XFAD mice, and Aβ-exposed mouse microglia cells.

    Critical for both investigations is the origin and the belief that Aβ and its fibrils are primary and upstream causative factors of AD disease, because experimentally they activate microglia in an ApoE-genotype-dependent manner. However, we believe the inverse physiology can be the more typical course in late-onset neurodegenerative diseases such as AD and LBD, or at least that a normal (vicious) feedback loop is equally plausible. In such a scenario, the initial abnormal lipid transfer by ApoE variants themselves and the inflammation caused is driving Aβ and synaptic pathologies. In this regard, data is lacking on ApoE levels and ApoE particle composition produced by the activated microglia. We feel this is critically important, especially for claims that there is a direct transfer of lipids from microglia to neurons, which is not clearly demonstrated, and typically the role carried out by astrocytes in vivo.


    . Mammalian lipid droplets are innate immune hubs integrating cell metabolism and host defense. Science. 2020 Oct 16;370(6514) PubMed.

    . Cell type-specific lipid storage changes in Parkinson's disease patient brains are recapitulated by experimental glycolipid disturbance. Proc Natl Acad Sci U S A. 2020 Nov 3;117(44):27646-27654. Epub 2020 Oct 15 PubMed.

    . Lipid accumulation induced by APOE4 impairs microglial surveillance of neuronal-network activity. Cell Stem Cell. 2022 Aug 4;29(8):1197-1212.e8. PubMed.

    View all comments by Ole Isacson
  9. Recent breakthroughs in Alzheimer's research have provided insight into a complex interplay between lipids, glial cells, and neurodegeneration, offering hope for innovative therapeutic strategies. The two studies discussed here play a pivotal role in unraveling these intricate connections.

    Prakash et al.'s research on microglial lipid dynamics has shed light on a critical aspect of AD. Their work underscores the role of microglia in AD pathogenesis and how these immune cells form lipid droplets in response to Aβ. While this discovery has the potential to advance our understanding of AD, it also comes with some caveats. The variability in LD load between microglia from different brain regions and sexes raises questions about the consistency of these findings across diverse patient populations. The study primarily focuses on Aβ phagocytosis, leaving room for exploration of other microglial functions impacted by LD formation. The study provides valuable insight into the association between genetic risk factors for AD and lipid metabolism, but it is essential to acknowledge that causality and specific mechanisms remain areas of ongoing research. 

    Haney et al.'s findings link genetic risk factors for AD, microglial lipid metabolism, and disease pathology. Their identification of an ACSL1-positive microglial state most abundant in AD patients with the APOE4/4 genotype has significant implications. However, it's essential to recognize that while this study uncovers an intriguing connection, it doesn't provide a complete mechanistic explanation for the observed effects. Further research is needed to elucidate the precise pathways through which ACSL1-positive microglia contribute to neurotoxicity, and how these findings can be translated into therapeutic interventions. 

    In the broader context of lipid-related mechanisms in neurodegenerative diseases, Guttenplan et al.'s work (see Oct 2021 news) provides insight into the role of saturated lipids in astrocyte-induced toxicity. Here, the discovery that very-long-chain fatty acids released by neurotoxic astrocytes can indeed kill damaged neurons was integral to the validation of this reactive astrocyte sub-state, suggesting that, like microglial, astrocyte lipids are important in maintaining the balance between brain physiology and pathology.  

    Building further on these three studies, the more recent work by Zhang et al., 2023, introduces a compelling dimension to our understanding of AD. Their investigation into the transmembrane protein 164 (TMEM164) as a regulator of neurotoxic reactive astrocytes highlights a potential therapeutic target for neurodegenerative disorders. By inhibiting the induction of neurotoxic reactive astrocytes, Zhang et al. demonstrate its efficacy in preventing Aβ deposition, neurodegeneration, and memory decline in AD mouse models. How this intervention will feed back onto microglia LDs highlighted by the Prakash and Haney studies remains to be seen. 

    Combined, recent discoveries offer a multifaceted view of the role of lipids in AD and build a foundation for future investigations and potential therapeutic strategies. They present exciting opportunities. At the same time, we must approach these findings with a recognition of the complexities involved and the need for further research to validate and refine these novel insights. 



    . Alleviating symptoms of neurodegenerative disorders by astrocyte-specific overexpression of TMEM164 in mice. Nat Metab. 2023 Oct;5(10):1787-1802. Epub 2023 Sep 7 PubMed.

    View all comments by Shane Liddelow
  10. I agree with the previous comments. Also, a new paper in Nature describes the discovery of a hybrid type of brain cell—between neurons and glia—called "glutamatergic astrocytes" which are a population of astrocytes in the hippocampus that can rapidly secrete glutamate. It would be interesting to know if lipids might accumulate within these glutamatergic astrocytes, as these cells play a role in hippocampal functions. The authors plan to investigate if these cells are involved in AD (de Ceglia et al., 2023).


    . Specialized astrocytes mediate glutamatergic gliotransmission in the CNS. Nature. 2023 Oct;622(7981):120-129. Epub 2023 Sep 6 PubMed.

    View all comments by Charles Stromeyer

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  1. Lipid-Laden, Sluggish Microglia? Blame Aβ.