In amyotrophic lateral sclerosis and frontotemporal dementia, the nuclear RNA-binding proteins TDP-43 and FUS mislocalize to cytoplasm, where they aggregate and contribute to pathology. Because both proteins contain putative nuclear export signals (NES) for the receptor exportin-1, some current therapeutic strategies focus on inhibiting this receptor in order to retain the proteins in the nucleus. However, new evidence casts doubt upon this strategy. In back-to-back papers published in the May 4 Scientific Reports, researchers led by Dorothee Dormann at Ludwig-Maximilians University, Munich, and Philip Thomas at the University of Texas Southwestern Medical Center, Dallas, independently reported that the NES in TDP-43 does not work. Instead of active export, TDP-43 appears to exit the nucleus via passive diffusion. Dormann’s group obtained similar data for FUS. These papers follow one in the March 15 Scientific Reports from Sami Barmada and colleagues at the University of Michigan, Ann Arbor, reporting that exportin-1 blockers had no effect on TDP-43 localization.
- Three papers dispute that TDP-43 and FUS are actively transported from the nucleus.
- Nuclear export proteins did not affect TDP-43/FUS transport.
- Instead, both proteins seem to diffuse out of the nucleus.
“This series of manuscripts … shows convincingly that nuclear export of TDP-43 and FUS are not as simple as they seem,” Barmada wrote to Alzforum (full comment below). He thinks the data complicate the rational design of therapies aimed at preventing nuclear export of TDP-43. Au contraire, Wilfried Rossoll, Mayo Clinic, Jacksonville, believes targeting exportin-1 is still a viable strategy. “It appears likely that these drugs address a general defect in nuclear protein import by inhibiting nuclear export, thus restoring a balance between these processes. I don’t think that correcting FUS and TDP-43 localization has been considered the most likely mechanism for the observed therapeutic effect in ALS disease models,” he wrote (see full comment below).
Some groups, such as Karyopharm Therapeutics in Newton, Massachusetts, are developing exportin-1 inhibitors to treat ALS and FTD. In preclinical models, KPT-276, KPT-335, and KPT-350 modestly protected against degeneration and cell death caused by TDP-43 overexpression and C9ORF72 repeats, which lead to TDP-43 mislocalization (Zhang et al., 2015; Chou et al., 2018). Similarly, deletion of the putative NES in FUS reportedly improved survival in flies (Lanson et al., 2011). These findings seemed to support active nuclear export.
To examine how TDP-43 and FUS leave the nucleus, Dormann set out to test the proteins in classic nuclear export assays, which had not been done before. First author Helena Ederle used an interspecies heterokaryon assay, which fuses cells from two different species to measure how much of a nuclear protein from one shows up in the nucleus of the other. To her surprise, TDP-43 and FUS from human cells accumulated in mouse nucleus equally well whether or not their putative NES motifs were disrupted by mutation. This suggested the sequences were not functional. Supporting this, inhibiting or silencing exportin-1 did not slow export of either protein.
How else were the proteins getting out? Ederle and colleagues knocked down the related receptor exportin-5, and silenced part of the mRNA export machinery, which can also shuttle proteins out of the nucleus. No effect, so that wasn’t it.
The authors then considered that the proteins might escape the nucleus by simple passive diffusion. Small molecules of less than 60 kD are known to shuttle through the nuclear membrane within minutes (Popken et al., 2015). TDP-43 is 43 kD, and FUS 53; lo and behold, increasing their size by adding large domains trapped them in the nucleus.
If nuclear egress occurs through diffusion, then binding TDP-43 and FUS to long, unspliced mRNAs in the nucleus should also hold them back. To test this, Ederle and colleagues treated cells with a transcriptional inhibitor for three hours. This resulted in a gradual loss of TDP-43 from the nucleus, suggesting that RNA binding acts to anchor the proteins there. The data also imply that physiological dimerization or oligomerization of TDP-43 and FUS in the nucleus could help retain the proteins, Dormann noted (Jan 2016 news; Afroz et al., 2017). She plans to investigate whether this oligomerization is disrupted in disease models.
Thomas and colleagues also found that the putative NES in TDP-43 was not required for export. They further showed that because this motif was nestled inside the protein, it was not exposed to solvent and would not be accessible for binding to exportin-1. On the other hand, enlarging TDP-43 by adding a large domain prevented egress, again suggesting the protein gets out through diffusion.
Then why has previous research found a beneficial effect from exportin-1 inhibitors? Dormann suggested these inhibitors might act indirectly, by inhibiting export of other nuclear proteins. Ke Zhang at Johns Hopkins University, Baltimore, thinks the inhibitors may prevent formation of stress granules. These structures are believed to induce TDP-43 and FUS to undergo liquid-liquid phase separation and then aggregate. Zhang recently reported that that several stress granule factors are shuttled between the nucleus and cytoplasm (Zhang et al., 2018). If exportin-1 inhibitors interrupt nuclear export of these factors, that could prevent stress granule formation and secondarily suppress TDP-43 and FUS aggregation as well (see comment below).—Madolyn Bowman Rogers.
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- Chou CC, Zhang Y, Umoh ME, Vaughan SW, Lorenzini I, Liu F, Sayegh M, Donlin-Asp PG, Chen YH, Duong DM, Seyfried NT, Powers MA, Kukar T, Hales CM, Gearing M, Cairns NJ, Boylan KB, Dickson DW, Rademakers R, Zhang YJ, Petrucelli L, Sattler R, Zarnescu DC, Glass JD, Rossoll W. TDP-43 pathology disrupts nuclear pore complexes and nucleocytoplasmic transport in ALS/FTD. Nat Neurosci. 2018 Feb;21(2):228-239. Epub 2018 Jan 8 PubMed.
- Lanson NA, Maltare A, King H, Smith R, Kim JH, Taylor JP, Lloyd TE, Pandey UB. A Drosophila model of FUS-related neurodegeneration reveals genetic interaction between FUS and TDP-43. Hum Mol Genet. 2011 Jul 1;20(13):2510-23. PubMed.
- Popken P, Ghavami A, Onck PR, Poolman B, Veenhoff LM. Size-dependent leak of soluble and membrane proteins through the yeast nuclear pore complex. Mol Biol Cell. 2015 Apr 1;26(7):1386-94. Epub 2015 Jan 28 PubMed.
- Afroz T, Hock EM, Ernst P, Foglieni C, Jambeau M, Gilhespy LA, Laferriere F, Maniecka Z, Plückthun A, Mittl P, Paganetti P, Allain FH, Polymenidou M. Functional and dynamic polymerization of the ALS-linked protein TDP-43 antagonizes its pathologic aggregation. Nat Commun. 2017 Jun 29;8(1):45. PubMed.
- Zhang K, Daigle JG, Cunningham KM, Coyne AN, Ruan K, Grima JC, Bowen KE, Wadhwa H, Yang P, Rigo F, Taylor JP, Gitler AD, Rothstein JD, Lloyd TE. Stress Granule Assembly Disrupts Nucleocytoplasmic Transport. Cell. 2018 May 3;173(4):958-971.e17. Epub 2018 Apr 5 PubMed.
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- Structural Biology Sheds Light on Regulation of Liquid-Liquid Phase Transition
- TDP-43 Snarls Nuclear Traffic
- Out of Chaos, Order: Reversible Amyloid Structure Seen in Phase Separation
- Newest ALS/FTD Gene Keeps Spotlight on Stress Granules
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