Ph.D. student in the group “Translational Mass Spectrometry and Biomarker Research" (Oeckl lab)
Posted 31 Oct 2023
German Center for Neurodegenerative Diseases (DZNE)
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The German Center for Neurodegenerative Diseases (DZNE) is a world-leading, internationally oriented research center, committed to discovering new approaches to prevent and treat neurodegenerative diseases. To this end, researchers at 10 DZNE sites across Germany pursue a translational and interdisciplinary strategy comprising five interconnected areas: fundamental research, clinical research, health care research, population health science, and systems medicine (www.dzne.de). The DZNE site in Ulm is inviting applications for a Ph.D. student in the group “Translational Mass Spectrometry and Biomarker Research (Oeckl lab)” Code – 6033/2023/10.
The Oeckl lab (www.oeckllab.com) uses state-of-the-art mass spectrometry for the discovery, characterization, and implementation of fluid biomarkers (blood, cerebrospinal fluid) for neurodegenerative diseases such as Alzheimer´s disease, amyotrophic lateral sclerosis (ALS), or frontotemporal dementia. It uses proteomic/peptidomic approaches in patient samples to discover novel biomarker candidates which might improve (early/differential) diagnosis, disease monitoring, or drug development (e.g., Oeckl et al., Acta Neuropathol 2020). To characterize specific biomarker candidates and the related pathomechanisms in detail (e.g., synaptic marker β-synuclein in blood), the lab develops highly sensitive and accurate methods using targeted mass spectrometry (MRM, PRM, IP-MS) to study samples from large patient cohorts and evaluate their value for use in the clinic or drug development (e.g., Oeckl et al., Alzheimers Dement 2023). These assays are intended to be used as reference measurement procedures in round-robins and biomarker implementation. For promising biomarker candidates, the lab develops highly sensitive immunoassays (ELISA, Simoa, Ella) for routine clinical application.
The association of the Oeckl lab to the Neurology Department of the Ulm University Hospital provides excellent interaction with neurologists and psychologists and access to well-characterized patient samples enabling highly clinically-oriented research. The lab has its own equipment for highly competitive biomarker research including state-of-the-art mass spectrometry (Exploris 480 with FAIMS, QTRAP6500), immunoassay instruments (Simoa, Ella) and devices for sample handling (e.g. KingFisher Apex, Viaflo96).
- Development of new and use of established targeted mass spectrometry (MRM, PRM, IP-MS) methods for key biomarkers in CSF and blood (e.g., β-synuclein, NfL, Tau, FUS).
- Investigation of samples (CSF, blood) from patients with neurodegenerative diseases using targeted MS and proteomic/peptidomic approaches (i.e. active participation in experimental work, experimental design, data generation, data analysis and interpretation).
- Supervision and maintenance of mass spectrometers and related devices (LC, autosampler).
- Prepare and write manuscripts for publication in international scientific journals.
- Oral presentation of results on local, national, and international conferences.
The DZNE is an equal opportunity employer. It is committed to employing disabled individuals and especially encourages them to apply.
- Master's degree in analytical chemistry, biochemistry, neuroscience, molecular medicine, or a related field.
- Good knowledge of protein biochemistry and good technical skills.
- Prior experience with mass spectrometry and neuroscience is advantageous.
- A keen interest in neurodegenerative diseases, handling of mass spectrometers and in moving the borders of what is possible.
- English language ability is a prerequisite.
- DZNE is looking for candidates who are open-minded, creative team-players, enthusiastic, have strong analytical skills, think critically, and with good social skills.
- Employment, payment and social benefits are consistent with those at other research institutes