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Home: Research: Forums: Live Discussions
Live Discussions

Updated 17 January 2002

Picking up the Pieces of Parkin

Benjamin Wolozin led this live discussion on 17 January 2002. Readers are invited to submit additional comments by using our Comments form at the bottom of the page.

View Transcript of Live Discussion — Posted 29 August 2006

View Comments By:
Michael Schlossmacher — Posted 17 January 2002


Background Text
By Benjamin Wolozin

Mutations in parkin are associated with a Parkinson-like syndrome, termed autosomal recessive juvenile parkinsonism (ARJP) (1). This syndrome resembles Parkinson's disease (PD) in that patients suffer from degeneration of dopaminergic neurons in the substantia nigra and a resulting paucity of movement. The syndrome differs from PD in multiple significant ways. AJRP is a genetic illness, whereas PD is most strongly associated with environmental factors (although it does appear to have an underlying genetic component). ARJP generally occurs in young individuals, whereas PD generally occurs in people over age 60. Finally, AJRP lacks Lewy bodies, which are a pathological hallmark of PD (2).

Despite the differences between AJRP and PD, the link between mutations in parkin and selective degeneration of neurons of the substantia nigra, suggest that understanding the biology of parkin could provide important insights into the mechanism of degeneration of dopaminergic neurons in PD. Indeed, several studies have already shown that parkin is involved in the pathophysiology of PD because parkin accumulates in Lewy bodies and axonal spheroids in PD, and mutations in parkin have been observed in some cases of classic PD (2, 3, 4).

Parkin turns out to be a ubiquitin ligase, which provides an immediate link to ubiquitination, which is a process that has previously been implicated in neurodegeneration because most pathological structures in neurodegenerative diseases are ubiquitinated (5, 6). For those of you not intimately acquainted with ubiquitin metabolism, I have adapted a simple diagram describing the ubiquitin-dependent proteasomal cascade that was generated by Ferrell and colleagues and is available on the web at, http://www.proteasome.com/publications/Ferrell/diagram1.htm (figure 1) (7).

The cell constantly turns over proteins. This is important for two reasons. First, the presence of rapid protein turnover provides a convenient mechanism for regulating protein levels, and thereby regulating protein function. The cyclin proteins, which regulate cell cycle, are regulated in this manner. A second important function is in elimination of damaged proteins, such as oxidized or denatured proteins such as occur in abundance in neurodegenerative diseases. The cell targets proteins for destruction by adding a small protein sequence, termed ubiquitin, which tags the protein for rapid destruction by a large, multi-subunit organelle, termed the proteasome (7). The ubiquitin-proteasomal cycle involves at least five steps and three proteins: 1) ubiquitin is activated by coupling it to a protein termed E1. 2) The E1 then transfers the ubiquitin to E2, termed ubiquitin conjugase. 3) The E3 ubiquitin ligase binds selectively to a target protein, and transfers multiple ubiquitins from E2 proteins to the substrate. 4) The ubiquitinated protein is bound by the proteasome and degraded. 5) The ubiquitin is removed and recycled by a protein termed ubiquitin C-terminal hydrolase (UCHL).

It should be noted that target specificity is achieved by the action of both E2, which consists of a family of at least nine separate proteins, and E3, which has numerous family members. The general process of protein tagging is actually more complicated because there are other proteins that resemble ubiquitin, such as SUMO and NEDD8, that can also be added to proteins by other ligases and target proteins to other organelles (8). Three different lines of evidence implicate ubiquitination in PD. Lewy bodies contain abundant ubiquitin, parkin is a cause of many cases of familial PD, and a mutation in UCHL1 has also been associated with PD on one kindred. The link between parkin, ubiquitination, and PD, has sparked immense interest because of the potential insights into mechanism of degeneration of dopaminergic neurons. More specifically, the proteins whose turnover is dependent on parkin might play a fundamental role in the process of degeneration of dopaminergic neurons.

Two new articles each identify a novel parkin substrate that could be important for the pathophysiology of PD. In a paper just published in Cell, Imai and colleagues have used a yeast two-hybrid screen to identify a protein, termed Pael-R, that binds parkin (9). Pael-R is a protein resident in the endoplasmic reticulum, and is a substrate for ubiquitination by parkin. They also show that levels of Pael-R are elevated in brains of patients with ARJP. This is important because particular stressors appear to make Pael-R unfold, and the unfolded protein is toxic, which provides a potential explanation for why loss of the mutations in parkin that cause ARJP might lead to degeneration of dopaminergic neurons in ARJP. Whether this is also involved in the degeneration of dopaminergic neurons in PD remains to be determined, but this is certainly one hope that drives the study of parkin. The second paper, by Shimura, Schlossmacher and colleagues addresses α-synuclein, which is a protein that has already been implicated in PD (10). Mutations in α-synuclein are associated with PD in 2-3 different kindreds (there is some debate as to whether two particular kindreds are actually related), and α-synuclein is the principal component of Lewy bodies, which are the pathological hallmark of PD.

The mechanism of accumulation of α-synuclein has been a subject of intense research. The protein seems to spontaneously aggregate, but aggregation also appears to be stimulated by exogenous factors, such as the mitochondrial toxin rotenone, free radicals, and metals, such as iron. The other major component of Lewy bodies is ubiquitin. Given that parkin is a ubiquitin ligase, it seems quite possible that parkin is responsible for ubiquitinating α-synuclein. This hypothesis is suggested by two previous studies, and one study in review, which demonstrate that parkin and α-synuclein co-localize in Lewy bodies (2, 4, 11). The current article, addresses this question directly, and shows that parkin binds to a novel 22 kDa glycosylated form of α-synuclein, termed aSp22. Parkin is able to ubiquitinate this form of α-synuclein in vitro. They are also able to show a functional link in vivo because brains from patients who died from ARJP, which lack active parkin, have higher levels of aSp22.

This work provides a direct link between parkin and α-synuclein, but it is a link that raises as many questions as it answers. One curious aspect of this story is that they do not demonstrate that parkin binds the native form of α-synuclein, which is the most abundant form of α-synuclein in the brain. Does parkin also interact with the native form of α-synuclein? Our own work suggests that parkin does interact with α-synuclein, because we are able to immunoprecipitate the two proteins together, however it might be that the interaction is weaker than for parkin and aSp22 (11).

Another more important question is whether parkin ubiquitinates the α-synuclein associated with Lewy bodies. This question has not yet been answered, but Shimura, Schlossmacher and colleagues report that they are unable to observe ubiquitination of α-synuclein in vitro. The apparent inability of parkin to ubiquitinate α-synuclein might be real, or might occur because the experimental conditions do not adequately mimic the conditions seen in the brains of patients with PD. It is not actually known yet whether α-synuclein in Lewy bodies is actually ubiquitinated. There are many other proteins associated with Lewy bodies that can be ubiquitinated and could account for the presence of ubiquitin in Lewy bodies. These proteins include parkin and synphilin. Whether the α-synuclein present in Lewy bodies is ubiquitinated can best be addressed by mass spectrometry, which is in progress.

These two papers demonstrate some important themes running through work in PD. First is the interest in parkin substrates. Dawson and colleagues were the first to identify a parkin substrate, termed CDCrel1 (6). Now we can add Pael-R and aSp22 as other parkin substrates. It is very likely that the upcoming year will lead to the identification of yet more substrates. The second theme is the value of ARJP brains, which are an in vivo knockout model of parkin function. Observation of elevated levels of candidate parkin substrates in ARJP brains represents an important element of proof indicating that the putative interaction is physiologically relevant. A final theme is the hypothesis that identifying proteins that bind parkin will help elucidate the mechanism of degeneration of dopaminergic neurons in PD. The upcoming research is likely to yield a large number of candidate parkin binding proteins whose importance in the pathophysiology of PD will only be known after they are tested in animal models. Of course, the final goal is to use this information to design therapies that can help people, by preventing the progression of PD.

References:

1. Kitada, T., Asakawa, S., Hattori, N., Matsumine, H., Yamamura, Y., Minoshima, S., Yokochi, M., Mizuno, Y., and Shimizu, N., Mutations in the parkin gene cause autosomal recessive juvenile parkinsonism. Nature, 392, 605 (1998); Abstract. Return to text

2. Shimura, H., Hattori, N., Kubo, S., Yoshikawa, M., Kitada, T., Matsumine, H., Asakawa, S., Minoshima, S., Yamamura, Y., Shimizu, N., and Mizuno, Y., Immunohistochemical and subcellular localization of Parkin protein: Absence of protein in autosomal recessive juvenile Parkinsonism patients. Ann. Neurol., 45, 668 (1999); Abstract. Return to text

3. Abbas, N., Lücking, C., Ricard, S., Dürr, A., Bonifati, V., De Michele, G., Bouley, S., Vaughan, J., Gasser, T., Marconi, R., Broussolle, E., Brefel-Courbon, C., Harhangi, B., Oostra, B., Fabrizio, E., Böhme, G., Pradier, L., Wood, N., Filla, A., Meco, G., Denefle, P., Agid, Y., and Brice, A. A wide variety of mutations in the parkin gene are responsible for autosomal recessive parkinsonism in Europe. Hum. Mol. Gen., 8, 567 (1999); Abstract. Return to text

4. Choi, P., Ostrerova-Golts, N., Sparkman, D., Cochran, E., Lee, J., and Wolozin, B., Parkin is metabolized by the ubiquitin/proteosomal system. NeuroReport, 11, 2635 (2000); Abstract. Return to text

5. Shimura, H., Hattori, N., Kubo, S., Mizuno, Y., Asakawa, S., Minoshima, S., Shimizu, N., Iwai, K., Chiba, T., Tanaka, K., and Suzuki, T., Familial parkinson disease gene product, parkin, is a ubiquitin-protein ligase. Nat Genet, 25, 302 (2000); Abstract. Return to text

6. Zhang, Y., Gao, J., Chung, K. K., Huang, H., Dawson, V. L., and Dawson, T. M., Parkin functions as an E2-dependent ubiquitin- protein ligase and promotes the degradation of the synaptic vesicle-associated protein, CDCrel-1. Proc Natl Acad Sci U S A, 97, 13354 (2000); Abstract. Return to text

7. Ferrell, K., Wilkinson, C. R., Dubiel, W., and Gordon, C., Regulatory subunit interactions of the 26S proteasome, a complex problem. Trends Biochem Sci, 25, 83 (2000); Abstract. Return to text

8. Muller, S., Hoege, C., Pyrowolakis, G., and Jentsch, S., SUMO, ubiquitin's mysterious cousin. Nat Rev Mol Cell Biol. 2, 202 (2001); Abstract. Return to text

9. Imai, Y., Soda, M., Inoue, H., Hattori, N., Mizuno, Y., and Takahashi, Y., An Unfolded Putative Transmembrane Polypeptide, Which Can Lead to Endoplasmic Reticulum Stress, is a Substrate of Parkin. Cell, 105, 891 (2001); Abstract. Return to text

10. Shimura, H., Schlossmacher, M., Hattori, N., Frosch, M., Trockenbacher, A., Schneider, R., Mizuno, Y., Kosik, K., and Selkoe, D., Ubiquitination of a New Form of Synuclein by Parkin from Human Brain: Implications for Parkinson's Disease. Science (2001); Abstract. Return to text

11. Choi, P., Golts, N., Snyder, H., Petrucelli, L., Chong, M., Hardy, J., Sparkman, D., Cochran, E., Lee, J., and Wolozin, B., Co-association of parkin and α-synuclein. (submitted) (2001); No abstract available. Return to text



Comments on Live Discussion
  Comment by:  Michael Schlossmacher, ARF Advisor
Submitted 17 January 2002  |  Permalink Posted 17 January 2002

Three principal issues arise from the literature reviewed by Dr. Wolozin and his comments: (1) an evolving concept that previously separated forms of parkinsonism actually present heterogeneity of one and the same Parkinson's disease (PD) syndrome; (2) the role parkin - as a neural ubiquitin ligase - plays in the prevention of dopaminergic neurodegeneration in normal brain and in Lewy body inclusion formation during the pathogenesis of PD; and (3) the mechanism by which parkin identifies substrates that are destined to be degraded via the proteasomal pathway.

(1) Common Parkinson's disease syndrome? Research on the genotype of parkin vis a vis the phenotype of PD has clearly demonstrated that the strict separation of familial versus sporadic, and of young onset versus late onset PD, is a concept of the past. Ujike et al. (in No To Shinkei, 1999) and the landmark paper of Lücking et al. (in NEJM, 2000) clearly identified several cases with clinically "idiopathic" PD, i.e., no family history and no known consanguinity, that were caused by deletions in the parkin-gene in an...  Read more

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