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Twin Study Suggests Epigenetic Differences in AD
21 August 2009. As is true with getting into college or receiving a job offer, it’s not just pedigree but also life experiences that may determine whether a person will develop Alzheimer disease. So suggests an analysis of identical twins—one who died of AD, one without AD—reported this month in the publicly accessible journal PLoS ONE. Researchers led by Paul Coleman, Sun Health Research Institute, Sun City, Arizona, examined postmortem brain tissue and found that cortical neurons from the AD twin had reduced DNA methylation, a biochemical process that can disrupt genes’ accessibility for transcription by attaching methyl groups to individual nucleotides.

In an earlier study (Mastroeni et al., 2008), first author Diego Mastroeni and colleagues found lower levels of DNA methylation, as well as reduced expression of DNA methyltransferase and other methylation regulators, in affected brain areas of sporadic AD patients. “This led to the question of whether these epigenetic effects we saw in AD were related to the [people’s] genes or to their life experience,” said Coleman, who is also a professor emeritus at the University of Rochester Medical Center, New York. In the sporadic AD study, genetic backgrounds were all over the map—which is why the scientists leaped at the opportunity to analyze epigenetic markers in identical twins discordant for AD. “This was a situation in which the genetic background would be quite similar, if not identical, and anything we saw could be attributed to life experience,” Coleman said. Other research has shown that identical twins who are genetically prone to AD can differ markedly in their age of onset and degree of pathology (Brickell et al., 2007).

The twins in the current study were white males who attended the same schools and worked as chemical engineers. One encountered extensive pesticides in his work and died at age 76 after a 16-year battle with Alzheimer disease. The other worked in a different environment and was cognitively normal when he died of prostate cancer at age 79. Pathologically, their brains could not have looked more different. At the time of his death, the twin with AD had an anterior temporal neocortex riddled with amyloid plaques and neurofibrillary tangles, the two key pathological hallmarks of AD. In his non-demented brother, however, “we had to hunt through the brain sections in order to find even one neurofibrillary tangle,” Coleman told ARF. The cognitively intact man also had comparatively higher expression of 5-methylcytosine, a marker of methylated cytosine-guanine (CpG) sites on DNA, in neurons, reactive astrocytes, and microglia of brain areas typically vulnerable to AD.

Apart from disease status, DNA methylation appears to vary with age and environmental factors. In a recent analysis of 217 non-pathological human tissues, published this month in PLoS Genetics (Christensen et al., 2009), researchers report that genes in CpG islands become increasingly methylated as people get older, whereas genes outside of these methylation hotspots lose methylation with age. Methylation status also correlated with environmental exposures such as tobacco smoking in that analysis, led by Karl Kelsey at Brown University. In an earlier study, Manel Estreller and colleagues at the Spanish National Cancer Center, Madrid, analyzed identical twins and found that DNA methylation status was very similar when the siblings were young but diverged more and more as they got older (Fraga et al., 2005). Those papers “make the case for environmental and aging effects on methylation,” Coleman said of the Estreller and Kelsey studies. “Our research shows that the concept of life events affecting DNA methylation may apply to development of the AD phenotype. It also stresses the potential importance of epigenetic phenomena in molecular mechanisms of AD.”

The new data may have ramifications for interpreting studies of AD genetics. “One study will find that, yes, this gene is a risk factor for AD, and others say, no, it’s not, and the statistics have some uncertainty in them,” Coleman said. “We raise the question of whether the probabilistic nature of the relationship between some genes and AD may be due to the fact that the genetic effects can be modulated by life experience.”

A recent study in Iceland may offer a case in point. Researchers at the University of Iceland and at deCODE Genetics, Reykjavik, reported a drastically shortened lifespan over the last 20 years in people with a hereditary amyloid angiopathy, and attribute this to diet changes that may have exacerbated the effects of a genetic mutation tied to the disease (Palsdottir et al., 2008 and ARF related news story). Studies in AD mouse models that overexpress mutant amyloid precursor protein (TgCRND8 and 129Sv) offer another example of a diet-gene interaction. When put on a diet deficient in folate, B1, and B6, the AD mice had reduced brain methylation activity in conjunction with amyloid-β overproduction and cognitive impairment (Fuso et al., 2008).

A link between epigenetics and AD also came up in a recent investigation led by Axel Schumacher at the Klinikum Rechts der Isar, Munich, Germany. However, unlike the current study, which reveals global demethylation in affected brain areas of the AD twin, Schumacher’s showed that most DNA methylation changes in AD brains are subtle and restricted to specific genes, including several involved in amyloid-β processing (PSEN1, ApoE) and methylation homeostasis (MTHFR, DNMT1) (Wang et al., 2008 and ARF related news story). In an e-mail to ARF, Schumacher noted that analyzing late-stage disease tissue makes it hard to determine whether the observed epigenetic phenotypes are the cause or the result of the disease. In the new study, “the global demethylation in the affected brain areas may indicate that specific components of the epigenetic machinery, such as DNA maintenance methylation, were inactivated, which in turn could indicate that the observed epigenetic patterns result from the course of the disease,” he wrote (see full comment below).

Coleman hopes to address this possibility in a genomewide study to identify specific genes affected by DNA methylation in AD, he told ARF. Future work in this area may benefit from a new approach that uses flow cytometry and state-of-the-art sequencing techniques to quantify the number of methylated molecules in a sample. Its developers show the method is sensitive enough to detect one methylated molecule in about approximately 5,000 unmethylated molecules in DNA from plasma or fecal samples. In a report published online 16 August in Nature Biotechnology (Li et al., 2009), researchers led by Sanford Markowitz, Case Western Reserve University, Cleveland, Ohio, and Bert Vogelstein at Johns Hopkins University School of Medicine, Baltimore, Maryland, have used the technology to detect early-stage colorectal cancer.—Esther Landhuis.

Reference:
Mastroeni D, McKee A, Grover A, Rogers J, Coleman PD. Epigenetic Differences in Cortical Neurons from a Pair of Monozygotic Twins Discordant for Alzheimer’s Disease. Aug 2009. PLoS ONE 4(8). Abstract

 
Comments on News and Primary Papers
  Primary Papers: Epigenetic differences in cortical neurons from a pair of monozygotic twins discordant for Alzheimer's disease.

Comment by:  Axel Schumacher
Submitted 21 August 2009 Posted 21 August 2009

There are many observations, including from our own laboratory, that indicate that epigenetic drift is likely to be a substantial mechanism predisposing individuals to LOAD and contributing to the course of disease. In this context, the study by Mastroeni et al. is a very interesting report, as we may gain more insight into epigenetic events in AD. However, in my opinion, the study presents a potentially unusual epigenetic phenotype in the affected co-twin. In a previous study from our group (Wang et al., 2008), we were able to show that most DNA methylation changes in AD brains are restricted to specific genes and are rather subtle. In this new study of discordant twins, the authors found significant global demethylation in the affected brain areas of the AD twin. In general, such rare monozygotic twins discordant for a disease offer a great opportunity to study molecular events that may contribute to a predisposition or the development of a complex disease such as AD. And indeed, this observation is highly interesting as it...  Read more

  Primary Papers: Epigenetic differences in cortical neurons from a pair of monozygotic twins discordant for Alzheimer's disease.

Comment by:  Paul Coleman, ARF Advisor
Submitted 24 August 2009 Posted 25 August 2009

Dr. Schumacher’s commentary about our paper makes a number of valid points that, in their totality, emphasize that there is much still to be learned about epigenetics with regard to the normally aging and Alzheimer brain. For example, he refers to “epigenetic drift” and “stochastic fluctuations,” phrases that imply a random process. We, on the other hand, prefer to use the term “life events,” which implies a causal connection between specific events and epigenetic consequences. Such causal connection is consistent with the work of Fuso et al. (2008), which shows that “PS1 and BACE genes can be upregulated even in vivo by B vitamin deficiency, a condition that limits methylation activity.” Of course, what is missing here is the demonstration that the experimental B vitamin deficiency led to decreased DNA methylation (or other epigenetic regulator) of the specific genes affected in their animals.

The hypothesis that life events, rather than a stochastic process, influence epigenetic phenomena is also consistent with the comment in Fraga et al. (2005) that similarities in the...  Read more


  Comment by:  Andrea Fuso (Disclosure)
Submitted 31 August 2009 Posted 1 September 2009

After reading with great interest the comment by Dr. Schumacher and the response by Dr. Coleman, I'd like to point out that the demonstration that B vitamin deficiency led to decreased DNA methylation (missing in our 2008 paper) was actually given in our recent paper on PS1 promoter demethylation (Fuso et al., 2009).

I completely agree with the conclusion that there is much more to understand in the area of epigenetic changes in LOAD. It seems to me of great importance that different approaches are applied by different groups to investigate this topic.

References:
Fuso A, Nicolia V, Pasqualato A, Fiorenza MT, Cavallaro RA and Scarpa S. Changes in Presenilin 1 gene methylation pattern in diet-induced B vitamin deficiency. Neurobiol Aging 2009. Abstract

View all comments by Andrea Fuso

Comments on Related Papers
  Related Paper: A drastic reduction in the life span of cystatin C L68Q carriers due to life-style changes during the last two centuries.

Comment by:  Caleb (Tuck) Finch
Submitted 1 July 2008 Posted 1 July 2008

Palsdottir et al. show in a fascinating analysis a major decrease in the age of death in carriers of hereditary cystatin C cerebral angiopathy (a L68Q mutation in the cystatin C gene) since the eighteenth century. The comparison with spouse lifespan is particularly striking because life expectancy of those surviving to adults was increasing at the same time as life expectancy of the L68Q carriers (“age of lethality penetrance”) was decreasing. In considering the possible environmental factors during these 200 years, the authors note the striking shift in diet composition, including a twofold greater carbohydrate intake (Fig. 7). It is also likely that the total caloric intake increased since the 1800s. Iceland suffered a major food shortage after the Viking age due to the increasingly cold climate: the population declined by about 35 percent and adult height shrank by two inches. As Einarsson (1573-1659) described it: "Formerly the earth produced all sorts of fruit, plants and roots. But now almost nothing grows.... Frost and cold torment people. The good years are rare.” The...  Read more

  Related Paper: A drastic reduction in the life span of cystatin C L68Q carriers due to life-style changes during the last two centuries.

Comment by:  Efrat Levy
Submitted 2 July 2008 Posted 2 July 2008

Palsdottir et al. conducted extensive linkage disequilibrium and genealogical studies of patients with HCCAA (also called hereditary cerebral hemorrhage with amyloidosis, Icelandic type—HCHWA-I) and found a decrease in age at onset of the disease, and age at death, of mutation carriers during the nineteenth century. This decrease in age at death, from 65 years in carriers born in 1825 to the present-day average of about 30 years, occurred while an increase in lifespan was documented in the general population in Iceland. This decrease in lifespan paralleled a major change in diet, most significantly an increase in sugar and salt intake in Iceland.

This study has important significance for our understanding of factors that affect amyloid deposition as well as cerebral hemorrhages. Studies, mainly in animal models of amyloidosis, should be conducted to determine the role of carbohydrates and/or salt in either cerebral amyloid angiopathy (CAA) or cerebral hemorrhage. Carbohydrates have been related to both. Multiple studies have suggested a link between type 2 diabetes and...  Read more


  Related Paper: Age-specific epigenetic drift in late-onset Alzheimer's disease.

Comment by:  George M. Martin, ARF Advisor (Disclosure)
Submitted 23 July 2008 Posted 23 July 2008

I am delighted that Wang and colleagues have done such a detailed analysis of the epigenome in LOAD. The results, especially the evidence of particularly marked epigenetic drifts in PS1 and APOE, are of great interest. The authors wisely point out, however, that there is an underlying methodological problem—variable shifts in subpopulation heterogeneity—and point out the need for follow-up studies using such methods as laser-assisted microdissection and single cell analysis.

While these results are likely to reflect, at least in part, variable environmental impacts, I am increasingly impressed with the potential role of stochastic events that can lead to epigenetic drifts in gene expression. There is enormous intra-specific variability in longevity within model organisms for which both genotype and environment appear to have been well controlled. This leads me to conclude that, while nature, nurture, and chance all play roles in modulating the rates of aging and the rates at which late-life disorders emerge, for the case of variations within a species, the...  Read more


  Related Paper: Epigenetic changes in Alzheimer's disease: Decrements in DNA methylation.

Comment by:  Andrea Fuso (Disclosure)
Submitted 28 February 2009 Posted 2 March 2009
  I recommend this paper

Methylation changes in AD are becoming more and more studied. The paper by Mastroeni and colleagues evidences that changes in DNA methylation are particularly evident in specific (sensitive) neurons.

It is very good that different researchers apply different strategies to study this feature: protein methylation (Sontag et al., 2008; Zhou et al., 2008), DNA methylation of specific AD loci in post-mortem brains (Mastroeni et al., 2009; Wang et al., 2008), DNA methylation in aging (Siegmund et al., 2007), methylation metabolism in AD models (Fuso et al., 2008).

Future developments on this topic will certainly help to clarify some aspects of the multifactorial basis of AD.

References:
Fuso A, Nicolia V, Cavallaro RA, Ricceri L, D'Anselmi F, Coluccia P, Calamandrei G, Scarpa S. B-vitamin deprivation induces hyperhomocysteinemia and brain S-adenosylhomocysteine, depletes brain S-adenosylmethionine, and enhances PS1 and BACE expression and amyloid-beta deposition in mice. Mol Cell Neurosci. 2008 Apr;37(4):731-46. Abstract

Mastroeni D, Grover A, Delvaux E, Whiteside C, Coleman PD, Rogers J. Epigenetic changes in Alzheimer's disease: Decrements in DNA methylation. Neurobiol Aging. 2008 Dec 29. Abstract

Siegmund KD, Connor CM, Campan M, Long TI, Weisenberger DJ, Biniszkiewicz D, Jaenisch R, Laird PW, Akbarian S. DNA methylation in the human cerebral cortex is dynamically regulated throughout the life span and involves differentiated neurons. PLoS ONE. 2007 Sep 19;2(9):e895. Abstract

Sontag JM, Nunbhakdi-Craig V, Montgomery L, Arning E, Bottiglieri T, Sontag E. Folate deficiency induces in vitro and mouse brain region-specific downregulation of leucine carboxyl methyltransferase-1 and protein phosphatase 2A B(alpha) subunit expression that correlate with enhanced tau phosphorylation. J Neurosci. 2008 Nov 5;28(45):11477-87. Abstract

Wang SC, Oelze B, Schumacher A. Age-specific epigenetic drift in late-onset Alzheimer's disease. PLoS ONE. 2008 Jul 16;3(7):e2698. Abstract

Zhou XW, Gustafsson JA, Tanila H, Bjorkdahl C, Liu R, Winblad B, Pei JJ. Tau hyperphosphorylation correlates with reduced methylation of protein phosphatase 2A. Neurobiol Dis. 2008 Sep;31(3):386-94. Abstract

View all comments by Andrea Fuso

Comments on Related News
  Related News: Party of Three: Genes, Environment, and Epigenetics

Comment by:  Schahram Akbarian
Submitted 27 June 2008 Posted 27 June 2008

The Bjornsson et al. study provides further evidence that DNA methylation differences between individuals increase with age. However, the study not only confirms this principle, but shows that genetic factors play a role in inter-individual methylation differences. It highlights the complexities when studying DNA methylation in aging. While it is thought that "environmental" factors such as alcohol, diet, perhaps medications, etc., play a role in modifying DNA methylation patterns in the genome, genetic factors could play a role as well. Recently, we identified in a postmortem brain study 2/50 gene loci that showed significant alterations in Alzheimer's subjects, as compared to controls (Siegmund et al., 2007). Interestingly, the changes in the Alzheimer's cohort, in terms of DNA methylation, appeared to reflect an acceleration of normal aging. Therefore, one could assume that the findings of Bjornsson et al. will be of great interest for aging-related disorders, including Alzheimer disease.

View all comments by Schahram Akbarian

  Related News: Party of Three: Genes, Environment, and Epigenetics

Comment by:  Jutta Bremer
Submitted 17 July 2008 Posted 22 July 2008
  I recommend the Primary Papers

These are indeed highly interesting papers.

To add to the story of epigenetic influences in the aging process, a new and fascinating study was published in PLoS ONE. The group around Axel Schumacher et al. at the Technical University Munich/Germany could show that people with late-onset Alzheimer disease have indeed an increased “epigenetic drift” in genes that may be responsible for some of the observed phenotypes. Additionally, the group found that some genes that participate in amyloid-β processing and methylation homeostasis show a significant interindividual epigenetic variability, which may contribute to disease predisposition. The observed epigenetic pattern would complement and support the aforementioned data, showing that the changes in the Alzheimer brain appeared to reflect an acceleration of normal aging. This could indicate that everybody has a certain likelihood of developing the disease.

References:
Wang SC, Oelze B, Schumacher A. Age-specific epigenetic drift in late-onset Alzheimer's disease. PLoS ONE. 2008;3(7):e2698. Abstract

View all comments by Jutta Bremer


  Related News: Drifting Toward AD—Epigenetic Changes Linked to Disease

Comment by:  Lawrence Rajendran
Submitted 23 July 2008 Posted 23 July 2008
  I recommend the Primary Papers

  Related News: Drifting Toward AD—Epigenetic Changes Linked to Disease

Comment by:  J. Lucy Boyd
Submitted 24 July 2008 Posted 28 July 2008
  I recommend the Primary Papers

  Related News: Research Brief: Epidemiological Study Links Cancer, AD

Comment by:  Karl Herrup
Submitted 27 December 2009 Posted 27 December 2009

The article by Roe et al. is a strong contribution to the literature of two fields—cancer and AD. But while the field will benefit from having access to the data and the analyses reported, the article and the accompanying editorial bring up two questions in my mind.

The first is a solely theoretical one. In their accompanying tables, the authors cite the ApoE profiles of the two groups (those getting cancer and those getting dementia) but unfortunately do not comment on the data itself. This is frustrating, because the strong correlation between carrying one or two ApoE4 alleles and elevated AD risk means a potential insight into mechanism has slipped through their fingers. The sample size is large enough that they should replicate the often-observed AD/ApoE4 connection in their dementia population. But then, according to their hypothesis, the cancer data should go the other way, i.e., ApoE4 genotype should be protective. The 4/4 numbers are small, but seem adequate given that increased risk of AD for this group has been estimated to be above 10-fold. I don't see this...  Read more


  Related News: Research Brief: Epidemiological Study Links Cancer, AD

Comment by:  Gregory Marlow
Submitted 11 February 2010 Posted 11 February 2010

One molecular mechanism that could explain this is sodium. In the Hypothesis Factory (1) I explain how repeated osmotic swelling of the brain resulting from hyponatremia could be a root cause of Alzheimer’s. It is widely believed that a high-salt diet is somehow responsible for a higher rate of stomach cancer. This may explain why the Japanese have a higher rate of stomach cancer coincident with a lower rate of Alzheimer’s.

References:
1. Could Hyponatremia Be the Root Cause of Alzheimer's?

View all comments by Gregory Marlow
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