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Toxic TDP-43 Truncates Point to Gain-of-Function Role in Disease
24 April 2009. TAR DNA-binding protein-43 (TDP-43) is clearly a player in frontotemporal lobar degeneration (FTLD) and amyotrophic lateral sclerosis (ALS), glomming into insoluble inclusions along with ubiquitin and other proteins. But scientists still wonder whether it is the lack of functional TDP-43, or the presence of TDP-43 with a new, toxic ability, that causes pathology. A paper published online in PNAS this week scores points for the gain-of-function theory. But the final tallies are not yet in, and senior author Leonard Petrucelli of the Mayo Clinic in Jacksonville, Florida, notes that the loss of functional TDP-43 from its normal home in the nucleus could have pathogenic consequences as well.

The report is the first demonstration of TDP-43 aggregation and toxicity in a mammalian model, said Aaron Gitler of the University of Pennsylvania, who was not involved in the work. Gitler has made a similar demonstration in yeast (ARF related news story and Johnson et al., 2008). “A big focus in the field now is just to try to figure out how TDP-43 contributes to disease,” he said, which would guide therapeutic approaches.

Petrucelli, first author Yong-Jie Zhang and colleagues previously found that TDP-43 is chopped by caspase-3 into carboxyl-terminal fragments of 25 and 35 kD (ARF related news story and Zhang et al., 2007). In the current work, they sought the downstream effects of that truncated TDP-43, expressing the same carboxyl-terminal fragments, tagged with GFP, in cell culture. In human embryonic kidney cells, full-length TDP-43 localized to the nucleus, but the fragments moved into the cytoplasm and formed aggregates including ubiquitin, as the protein does in people with TDP-43 proteinopathies. The scientists focused further experiments on the shorter, 25-kDa piece, since it has been linked to ALS pathology (ARF related news story and Neumann et al., 2006).

The fragment was a killer. Expressed in differentiated neuroblastoma cells, the shortened TDP-43 led to fragmented nuclei and activation of caspase-3, both signs of apoptosis. Zhang and colleagues then asked whether the fragment required phosphorylation to exert its toxic effects. TDP-43 fragments from the brains of people who had ALS or FTLD with ubiquitin inclusions (the form that includes TDP-43 proteinopathy) are phosphorylated (Hasegawa et al., 2008). Using a phospho-TDP-43 antibody, the researchers discovered that in cells transfected with the truncate, the fragment was phosphorylated, but they found that a mutant 25 kD fragment lacking the serines necessary for the modification aggregated as well, showing that phosphorylation is not required for inclusion formation.

Zhang and colleagues reasoned that the fragment could cause cell death by either exerting its own toxic influence, or by binding and sequestering full-length TDP-43, dragging it away from the nucleus where it regulates transcription and RNA splicing. To distinguish between these two possibilities, they tested endogenous TDP-43 function. The scientists transfected HeLa cells with the cystic fibrosis transmembrane conductance regulator (CFTR) as a marker for normal TDP-43 activity. Wild-type TDP-43 prevents exon 9 expression in this gene. Exon 9 transcripts were not increased in cells co-transfected with the TDP-43 fragment, suggesting endogenous TDP-43 nuclear localization and activity were unaffected by the truncate. The fragment, then, must have its own toxic mechanism.

The paper provides evidence for a TDP-43 toxic gain of function, but Petrucelli noted that they only focused on a single piece of the protein. “We are not arguing that the caspase fragment is the only fragment that is found in ALS and FTLD,” he said. “Clearly other fragments are possible,” and those could have other detrimental effects.

In the course of their research, Zhang and colleagues engineered an antibody specific for the 25 kDa TDP-43 fragment. “I think that was the most exciting part of the paper, in some respects,” Petrucelli said. Like the phospho-TDP-43 antibody, this one could be useful in distinguishing FTLD with ubiquitin and TDP-43 inclusions from the tau-based form of the disease, Petrucelli suggested. That might help doctors match treatments to different kinds of FTLD, he said.

The current study seems to solidify the toxic gain of function for TDP-43. “This shows that these carboxyl-terminal fragments might be playing a direct role in the disease pathogenesis,” Gitler said, although he noted the fragment’s toxicity should be confirmed in animals. But another study, published online April 17 in FEBS Letters, found that fruit flies lacking TDP-43 had locomotion problems, abnormal neuromuscular junctions, and reduced lifespan (Feiguin et al., 2009). That work adds points to the loss of normal function column. Ultimately, there may not be a simple distinction between acquired toxicity and lost utility. “I think it’s kind of both,” Gitler said.

To further elucidate the role of TDP-43 in disease, scientists are racing to discover or create models of TDP-43 pathology in animals (ARF related news story and Tatom et al., 2009). In an April 17 paper in Neuroscience Letters, scientists report that TDP-43 aggregates with ubiquitin in a common ALS model system—mice overexpressing mutant human superoxide dismutase (see Shan et al., 2009). However, these researchers did not report carboxyl-terminal fragments or hyperphosphorylated TDP-43, even in end-stage animals, adding a new layer of complexity to the TDP-43 puzzle.—Amber Dance.

Reference:
Zhang Y-J, Xu Y-F, Cook C, Gendron T, Roettges P, Link CD, Lin W-L, Tong J, Castanedes-Casey M, Ash P, Gass J, Rangachari V, Buratti E, Baralle F, Golde T, Dickson DW, Petrucelli L. Aberrant cleavage of TDP-43 enhances aggregation and cellular toxicity. PNAS Early Edition April, 2009. Abstract

 
Comments on Related Papers
  Related Paper: Mimicking aspects of frontotemporal lobar degeneration and Lou Gehrig's disease in rats via TDP-43 overexpression.

Comment by:  Samir Kumar-Singh
Submitted 7 March 2009 Posted 7 March 2009

The issue of whether overexpression of wild-type TDP-43 in rodent brain could be neurotoxic is neatly brought out in this paper from the group of Ronald Klein with senior authors Dennis Dickson and Mike Hutton. Using an adeno-associated virus type 9 (AAV9) vector for human TDP-43 expression by stereotactic injection into the rat substantia nigra (SN), Tatom and colleagues show that overexpression of human wild-type TDP-43 on its own can kill dopaminergic neurons in rats in a dose-dependent manner (Tatom et al., 2009).

This approach is surely welcome at a time when many laboratories are struggling to get a decent TDP-43 expression in transgenic germlines. The reason why this is problematic is made apparent by this paper, where (roughly estimated) threefold wild-type TDP-43 overexpression almost completely wipes out the targeted neurons accompanied by neurodegeneration-related astro- and microgliosis. TDP-43 was selectively expressed in neurons as AAV9 has a natural neurotropism, perhaps due to the virus capsid (Bartlett et al., 1998); and while SN is chosen for sake of...  Read more

Comments on Related News
  Related News: New Ubiquitinated Inclusion Body Protein Identified

Comment by:  Julene K. Johnson
Submitted 12 October 2006 Posted 12 October 2006

From a clinical perspective, the identification of TDP-43 protein represents a major breakthrough in our understanding of both frontotemporal lobar degeneration (FTLD) and amyotrophic lateral sclerosis (ALS). The TDP-43 is the mystery protein that is associated with the ubiquitin-positive inclusions that are commonly found in many patients with FTLD and in most, if not all, patients with ALS.

This finding is particularly important because several recent papers suggest that patients who have FTLD with ubiquitin inclusions at autopsy (FTLD-U) account for approximately 50 percent of all autopsy-confirmed FTLD cases (1-3). The remaining majority of FTLD cases are associated with the tau protein, but other neuropathological diagnoses exist. The finding that possibly one-half of all FTLD patients may have ubiquitin-positive neuropathology means that any breakthroughs in the biology of this protein could potentially translate into helping a large proportion of FTLD patients.

In addition, the finding that the TDP-43 protein is also found in patients with ALS further supports...  Read more


  Related News: New Ubiquitinated Inclusion Body Protein Identified

Comment by:  David M.A. Mann
Submitted 12 October 2006 Posted 12 October 2006

In this paper, Drs. Lee and Trojanowski and colleagues have at long last identified the mystery protein hiding within the ubiquitinated inclusions that characterize certain histological forms of frontotemporal lobar degeneration (FTLD), termed FTLD-U. This task has challenged neuroscientists for well over a decade, with all prior attempts at identification using immunohistochemical or biochemical methods proving fruitless. The culprit protein is a TAR DNA-binding protein, known as TDP-43. This protein is present within all the ubiquitinated structures in FTLD-U, viz., the neuronal cytoplasmic inclusions, the neuronal intranuclear inclusions, and the neuritic changes, though whether this is the sole component of these structures (other than ubiquitin) remains uncertain. Some previous studies reported the presence of p62 protein within neuronal cytoplasmic inclusions, but such findings have been inconsistent. Moreover, Lee and Trojanowski have shown that the ubiquitinated neuronal cytoplasmic inclusions seen within spinal and cranial nerve nuclear motor neurons in motor neuron...  Read more

  Related News: New Ubiquitinated Inclusion Body Protein Identified

Comment by:  Tetsuaki Arai
Submitted 14 October 2006 Posted 18 October 2006
  I recommend the Primary Papers

Neumann, Sampathu, Kwong, and colleagues have resolved a long-standing issue in the research field of frontotemporal lobar degeneration (FTLD) and amyotrophic lateral sclerosis (ALS). These authors have identified TDP-43 as a major component of ubiquitin-positive inclusions that characterize these disorders. They first extracted a fraction from the patients' brains using monoclonal antibodies and then analyzed it by mass spectrometry. Their findings have greatly facilitated the understanding of the molecular pathogenesis of FTLD and ALS.

Independently, we have also found TDP-43 as a component of the inclusions in FTLD [1]. Following electrophoresis of the sarkosyl-insoluble brain extracts from FTLD, Alzheimer disease (AD) and dementia with Lewy bodies (DLB), we have done exhaustive analyses by mass spectrometry. Following identification of each molecule that is more abundant in FTLD than AD/DLB, we have studied FTLD brain samples immunochemically and immunohistochemically. The antibodies to TDP-43 have immuno-stained neuronal inclusions and dystrophic neurites in the...  Read more


  Related News: Meet the First Published TDP-43 Mouse

Comment by:  Samir Kumar-Singh
Submitted 16 October 2009 Posted 16 October 2009

This study elegantly gives a first insight on a transgenic mouse model of mutant TDP-43 (A315T) identified in familial ALS patients. For those in the field, it is clear that generating these mouse models is a mammoth task on its own. Among the many interesting findings in this paper, the first to catch my attention was that the 25-kDa TDP-43 C-terminal fragments (CTFs) were recovered from detergent-soluble fractions but not from urea fractions as observed in sporadic and familial ALS/FTLD patients. If the TDP-43 25-kDa CTFs would indeed be confirmed as the real culprit, this would yet again emphasize the importance of soluble but not aggregated protein/peptide in cellular toxicity, as has been shown for a number of other proteinopathies including Aβ, α-synuclein, polyglutamine expansion in Huntingtin, and mutant SOD1.

Another important observation made in this paper was that ubiquitin-immunoreactive (ir) inclusions observed in select neurons including motor neurons were not TDP-43-ir. Thus, the mutant TDP-43 (A315T) mice do not completely model ALS, where...  Read more

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