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Studies Reveal New Hope, Old Problems With AD Biomarkers
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17 April 2009. Brain imaging and cognitive tests may be the gold standards for tracking Alzheimer disease progression, but clinical trials using these procedures are expensive, risky, and time-consuming, making the development of reliable go-betweens a pressing goal for AD researchers. Three recent papers highlight new promise, and expose nagging pitfalls, of one of the field’s most widely used surrogate measures: cerebrospinal fluid biomarkers. CSF samples offer researchers an indirect peek at signature molecules in AD and other neurodegenerative diseases without having to probe the brain itself.
In one study, scientists use a new method for quantifying protein turnover in the central nervous system to show that a candidate AD drug lowers CNS Aβ production in healthy people. This approach has the potential to streamline drug development, by indicating early on if and to what extent experimental compounds reach their CNS target. More generally, biomarker analysis presents an ongoing challenge in that their measurement varies markedly in different assays, even among different labs using the same assays. Researchers have tried to get a better handle on this problem, and the second study reported in this story finds sobering variability among 20 labs worldwide that measured Aβ42, tau, and phospho-tau in the same CSF samples. Meanwhile, a third report describes a potential new AD biomarker in the form of reduced CSF levels of the sortilin-related receptor SORLA.
Several years ago, Randy Bateman, David Holtzman, and colleagues at Washington University School of Medicine in St. Louis, Missouri, devised a method that combines stable isotope labeling with CSF sampling to measure production and clearance of Aβ peptides in real time in human CNS (Bateman et al., 2006 and ARF related news story). Through a lumbar catheter, the researchers collect hourly CSF and blood samples from patients receiving intravenous infusion of 13C-labeled leucine, which gets incorporated into newly made Aβ. Tracking the rise and fall of the percentage of labeled Aβ over time reveals how quickly Aβ gets produced and cleared, respectively.
In a study that appeared online 10 April in the Annals of Neurology, these scientists applied the method, called stable isotope-linked kinetics (SILK), to gauge how effectively an experimental AD drug could decrease Aβ production. Twenty healthy male volunteers (ages 21-50) received Eli Lilly’s γ-secretase inhibitor LY450139 once at one of three oral doses (100 mg, 140 mg, 280 mg), or placebo. Using ELISA, the researchers measured Aβ1-x, Aβ1-40, and Aβ1-42 concentrations in CSF and blood samples collected hourly from each participant over a 36-hour period. During the 12 hours of labeled leucine administration, patients on the highest drug dose had an 84 percent drop in CNS Aβ generation, followed by 52 percent and 47 percent decreases for the middle and lowest doses, respectively. Aβ clearance rates did not differ among the groups.
“The study showed for the first time that the Lilly drug actually inhibited Aβ production in the human CNS,” wrote Holtzman in an e-mail to ARF. He noted that previous human studies (Siemers et al., 2006; Siemers et al., 2007)
with this drug were unable to demonstrate this for several possible reasons, including timing of CSF sampling, which likely did not account for hour-by-hour fluctuations of CSF Aβ levels seen routinely in healthy people (Bateman et al., 2007). Though the study showed that a single dose of Lilly’s γ-secretase inhibitor reduced new CNS Aβ synthesis by about 50 to 90 percent over a 12-hour window, “whether this is enough to influence AD pathogenesis is not clear,” Holtzman wrote.
In the meantime, C2N Diagnostics, a St. Louis company he founded with Bateman and others, is using the SILK-Aβ technology to test other AD drug candidates, such as those that inhibit Aβ production. Bateman told ARF in an e-mail that he thinks the SILK method could be used in early (Phase 1 or 2) clinical trials to determine if drugs are hitting their CNS targets. Such information could help sponsors decide how to proceed with longer, costlier trials that test their drug’s effect on cognition—or, in some cases, to scrap further development of the drug.
Alongside this ray of hope comes news reminding the field how unruly these biomarkers can be when it comes to reproducing their measurements reliably across labs and protocols. Though CSF levels of Aβ42, tau, and phospho-tau can distinguish patients with AD from those without symptoms or with other types of dementia in the hands of several independent groups by now, absolute biomarker measurements differ significantly among labs, complicating data analysis in multicenter studies. A multi-institutional collaboration led by Marinus Blankenstein and Niek Verwey of VU University Medical Center, Amsterdam, has tried to address this issue more formally by comparing AD biomarker measurements made by 20 centers worldwide. The researchers sent three CSF samples—one with high tau and phospho-tau levels, one with low Aβ1-42, and one with a normal biomarker profile—to 13 labs in 2004. In 2008, they distributed the same samples to 18 labs, 11 of which had also participated in 2004.
The main gist of the findings, reported online 2 April in the Annals of Clinical Biochemistry, is that the sites differed considerably in their measurements of all three biomarkers tested—particularly Aβ1-42, which had more than 22 percent variability among centers. The team found substantial variation even when comparing biomarker measurements made by the same lab in 2004 and 2008. Variability must drop to less than 10 percent before scientists can reliably compare biomarker measurements from different sites to determine a reference range for AD that all centers can use, Verwey wrote in an e-mail to ARF (see full comment below).
For their part, Alzheimer’s Disease Neuroimaging Initiative (ADNI) scientists have analyzed CSF samples from several hundred subjects in the U.S. and Canada and defined, in a recent paper (Shaw et al., 2009 and ARF related news story), threshold values for CSF Aβ and tau, as well as standardized protocols for measuring protein levels and handling samples. (See also in-depth ARF ADNI series). Standardization may become even more crucial as new protein detection methods—for example, an ELISA that differentiates between oligomeric and monomeric forms of Aβ (Xia et al., 2009 and ARF related news story)—come onto the scene.
The kind of assay validation done by ADNI has not yet been done for blood Aβ measurements, as a recent study shows (Okereke et al., 2009). Researchers led by Francine Grodstein at Brigham and Women’s Hospital, Boston, spiked plasma samples with known amounts of Aβ. They sent the spiked samples to various U.S. labs that used five different protocols to measure plasma Aβ40 and Aβ42. Though assay reliability and Aβ stability after processing delay was encouraging, the study was disappointing in its recovery data. Recovery rates for Aβ40 ranged from -24.3 to 44.2 percent, and for Aβ42 from 17.1 to 60.7 percent. These findings make “comparisons of absolute Aβ values across studies inaccessible at this time,” wrote lead author Olivia Okereke, also of Brigham and Women’s Hospital, in an e-mail to ARF. “Clearly, an important next step for the field is assay standardization work, as has been accomplished recently for some of the lipid and inflammatory biomarkers in cardiovascular disease.”
While studies of the older CSF markers Aβ and tau proceed apace, scientists have identified what could turn out to be a new one. In this month’s Archives of Neurology, a team led by Greg Cole at the University of California, Los Angeles, has detected reduced levels of SORLA in CSF of AD patients.
SORLA, a transmembrane neuronal sorting protein that reduces Aβ production, emerged several years ago as a genetic risk factor for late-onset AD (Rogaeva et al., 2007 and ARF related news story). Scientists have detected decreased SORLA expression in LOAD brain tissue (Scherzer et al., 2004; Zhao et al., 2007), and a more recent study
has linked SORLA gene variants with reduced CSF Aβ42 in AD (Kölsch et al., 2008). For his part, Cole has shown that putting mice on a diet rich in omega-3 fatty acids leads to increased SORLA expression, suggesting that SORLA might be involved in mediating the Aβ-lowering effects of this special diet (Ma et al., 2007).
Whether this increase in SORLA expression occurs in people has not been tested. “But if you could see the levels of the protein in CSF, then you would be able to ask that question,” Cole told ARF. Given that SORLA gets cleaved near its membrane C-terminus, his team reasoned that the soluble N-terminal piece is secreted into the CSF and could be detected there. Analyzing postmortem human CSF samples, first author Qiu-Lan Ma and colleagues confirmed this hunch. They were able to detect SORLA in the CSF samples, and found that its expression was reduced in autopsy-confirmed AD cases. Furthermore, they showed that SORLA levels in CSF correlated strongly with Aβ42 concentrations.
“Taken together, these observations support the hypothesis that [SORLA] is directly involved in the pathogenesis of Alzheimer disease,” wrote Richard Mayeux, Columbia University, New York, and Peter St. George-Hyslop, University of Toronto, Canada, in an editorial accompanying the study. “More importantly, it is clear that a better understanding of subcellular trafficking of APP as well as the various functional roles of SORL1 may point to a novel therapeutic strategy that has not yet been considered.”—Esther Landhuis.
References:
Bateman RJ, Siemens E, Mawuenyega KG, Wen G, Bronwing KR, Sigurdson WC, Yarasheski KE, Friedrich SW, DeMattos RB, May PC, Paul SM, Holtzman DM. A gamma-secretase inhibitor decreases amyloid-beta production in the central nervous system. Annals of Neurology, 2009 Apr 10. Abstract
Verwey NA, van der Flier WM, Blennow K, Clark C, Sokolow S, De Deyn PP, Galasko D, Hampel H, Hartmann T, Kapaki E, Lannfelt L, Mehta PD, Parnetti L, Petzold A, Pirttila T, Saleh L, Skinningsrud A, Swieten JC, Verbeek MM, Wiltfang J, Younkin S, Scheltens P, Blankenstein MA. A worldwide multicentre comparison of assays for cerebrospinal fluid biomarkers in Alzheimer's disease. Ann Clin Biochem. 2009 Apr 2. Abstract
Ma Q-L, Galasko DR, Ringman JM, Vinters HV, Edland SD, Pomakian J, Ubeda OJ, Rosario ER, Teter B, Frautschy SA, Cole GM. Reduction of SorLA/LR11, a Sorting Protein Limiting Beta-Amyloid Production, in Alzheimer Disease Cerebrospinal Fluid. Arch Neurol. Apr 2009;66(4):448-457. Abstract
Mayeux R, St. George-Hyslop P. Brain Traffic: Subcellular Transport of the Amyloid Precursor Protein. Arch. Neurol. Apr 2009;66(4):433-434. Abstract
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Comments on News and Primary Papers |
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Primary Papers: A worldwide multicentre comparison of assays for cerebrospinal fluid biomarkers in Alzheimer's disease.
Comment by: Niek Verwey
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Submitted 17 April 2009
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Posted 17 April 2009
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CSF levels of Aβ1-42, tau and p-tau can discriminate Alzheimer disease patients from controls or from patients with other types of dementia, and can identify incipient AD among patients with mild cognitive impairment ( Hansson et al., 2006; Blennow et al., 2003). However, large differences are reported in absolute biomarker levels between centers ( Sunderland et al., 2003), making it difficult to set up multi-center studies including multicenter treatment trials. To overcome this problem, external quality control assessment schemes (EQAS) are needed ( Libeer et al., 2001). Our study describes the first worldwide EQAS for CSF biomarkers (20 different centres measured the same CSF samples), reporting relatively high inter-center variations, especially for Aβ1-42 (>22 percent). Lower inter-center variability (
Read more
CSF levels of Aβ1-42, tau and p-tau can discriminate Alzheimer disease patients from controls or from patients with other types of dementia, and can identify incipient AD among patients with mild cognitive impairment ( Hansson et al., 2006; Blennow et al., 2003). However, large differences are reported in absolute biomarker levels between centers ( Sunderland et al., 2003), making it difficult to set up multi-center studies including multicenter treatment trials. To overcome this problem, external quality control assessment schemes (EQAS) are needed ( Libeer et al., 2001). Our study describes the first worldwide EQAS for CSF biomarkers (20 different centres measured the same CSF samples), reporting relatively high inter-center variations, especially for Aβ1-42 (>22 percent). Lower inter-center variability (<10 percent) is required to reliably distinguish a difference in group, to make multicenter biomarker comparisons possible, and eventually to obtain an inter-center reference range for AD.
View all comments by Niek Verwey
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Primary Papers: A gamma-secretase inhibitor decreases amyloid-beta production in the central nervous system.
Comment by: Lary Walker, ARF Advisor
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Submitted 17 April 2009
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Posted 17 April 2009
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I recommend this paper
This paper nicely describes the use of an elegant method for assessing brain-relevant biomarkers of protein metabolism in humans. View all comments by Lary Walker
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Primary Papers: Reduction of SorLA/LR11, a sorting protein limiting beta-amyloid production, in Alzheimer disease cerebrospinal fluid.
Comment by: Hilkka Soininen, ARF Advisor
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Submitted 17 April 2009
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Posted 21 April 2009
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I recommend this paper
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Primary Papers: Reduction of SorLA/LR11, a sorting protein limiting beta-amyloid production, in Alzheimer disease cerebrospinal fluid.
Comment by: Richard C. Mohs, ARF Advisor (Disclosure)
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Submitted 22 April 2009
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Posted 22 April 2009
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I recommend this paper
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Comments on Related Papers |
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Related Paper: Human amyloid-beta synthesis and clearance rates as measured in cerebrospinal fluid in vivo.
Comment by: Takaomi Saido, ARF Advisor
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Submitted 2 July 2006
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Posted 2 July 2006
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I recommend this paper
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Related Paper: Cerebrospinal fluid tau/beta-amyloid(42) ratio as a prediction of cognitive decline in nondemented older adults.
Comment by: John Trojanowski, ARF Advisor
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Submitted 14 January 2007
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Posted 15 January 2007
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I recommend this paper
This study adds further to our ability to exploit chemical and imaging biomarkers for the diagnosis of early AD, while emphasizing the need to identify other biomarkers that may predict who will progress to develop Abeta and tau pathologies prio to the onset of these AD pathologies. View all comments by John Trojanowski
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Related Paper: Performance characteristics of plasma amyloid-beta 40 and 42 assays.
Comment by: George Perry (Disclosure)
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Submitted 11 March 2009
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Posted 12 March 2009
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I recommend this paper
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Comments on Related News |
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Related News: CSF Aβ—New Approach Shows Rapid Flux, May Help Evaluate Therapeutics
Comment by: PATRICIA ESTANI
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Submitted 2 July 2006
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Posted 3 July 2006
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I recommend the Primary Papers
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Related News: SORLA Soars—Large Study Links Gene to Late-onset AD
Comment by: Rudy Tanzi (Disclosure)
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Submitted 15 January 2007
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Posted 15 January 2007
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This new study showing association of SORL1 with late-onset Alzheimer disease (LOAD) provides further support for a role of this gene in AD, confirming earlier studies by Lah, Small, Gandy, Masters, and others implicating SORL1 in AD pathogenesis.
The novelty of this study is the inclusion of genetic association of several SNPs in SORL1 with various samples of different ethnicities. The results for specific SNPs across samples are interesting but inconsistent, with various SNPs showing positive results in some samples and negative data in others.
This is often the case for many novel AD candidate genes when tested in multiple samples, either in a single study or across multiple studies.
The Alzgene.org
database on Alzforum reveals no less than two dozen genes that exhibit statistically significant association with LOAD after meta-analyses of multiple samples. These can be found in the "Top Alzgene Results" box in the right margin of Alzgene. A full description of Alzgene and its findings can be found...
Read more
This new study showing association of SORL1 with late-onset Alzheimer disease (LOAD) provides further support for a role of this gene in AD, confirming earlier studies by Lah, Small, Gandy, Masters, and others implicating SORL1 in AD pathogenesis.
The novelty of this study is the inclusion of genetic association of several SNPs in SORL1 with various samples of different ethnicities. The results for specific SNPs across samples are interesting but inconsistent, with various SNPs showing positive results in some samples and negative data in others.
This is often the case for many novel AD candidate genes when tested in multiple samples, either in a single study or across multiple studies.
The Alzgene.org
database on Alzforum reveals no less than two dozen genes that exhibit statistically significant association with LOAD after meta-analyses of multiple samples. These can be found in the "Top Alzgene Results" box in the right margin of Alzgene. A full description of Alzgene and its findings can be found in Bertram et al., 2007 in this month's issue.
By statistical analyses on Alzgene prior to this paper, SORL1 would be roughly the twenty-fifth gene to show statistically significant association with LOAD after testing in multiple independent samples. To the authors' credit, a sufficient number of independent samples were tested in this new SORL1 paper to already lend itself to meta-analysis on Alzgene. According to Lars Bertram, these findings are now being added to the site and are summarized here. The bottom line is that several of the meta-analyses for the SORL1 SNPs tested are significant. However, the effect on risk is very modest—the strongest allelic odds ratio for SORL1 is only 1.21. This means that the strongest effect of any SNP in SORL1 in the new study would increase risk for AD by 21 percent. In contrast, one copy of ApoE4 increases risk by about 300 percent.
The top hits on the Alzgene site are ranked by strength of their effect on risk for AD. As expected, ApoE4 is number one. Based on the data in the new study by St George-Hyslop and colleagues, SORL1 would not make the top 10 list, but rank in at number 12 out of 25. So while SORL1 can be added to the list, its small effects on risk based on the multiple case-control samples tested, as well as the less impressive results across the family-based samples tested, would suggest that SORL1 will turn out to be a minor genetic risk factor for AD.
Additional replication testing will be needed to see if the effects on risk hold up over time. As with all AD gene candidates proposed beyond the established four AD genes (APP, PSEN1, PSEN2, ApoE), the true validity of
SORL1 as a novel AD gene will need to await the identification of validated pathogenic mutations or variants.
View all comments by Rudy Tanzi
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Related News: SORLA Soars—Large Study Links Gene to Late-onset AD
Comment by: John Hardy, ARF Advisor
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Submitted 15 January 2007
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Posted 15 January 2007
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This work is welcome news from an excellent group of investigators. They will surely allow me to play devil’s advocate and caution two things. First, however enticing the cell biology might be, at this point it is a distraction. The question at hand is a genetic question, and to answer the genetics per se, the cell biology data is irrelevant. Unfortunately, journal editors often demand cell biology in genetics papers, even if it’s just an initial set of experiments.
Second, while many sample series were used, there is not an exact replication of the haplotypic association between the sample series, making these "replications," in my view, suspect. In this, the work resembles our own work (Li et al., 2006 and Grupe et al., 2006 on other risk genes). In these cases, too, we obtained multiple, but not entirely convincing replications.
Late-onset Alzheimer genetics is proving to be a very difficult problem. I personally doubt whether this is the new ApoE, but genuine attempts at...
Read more
This work is welcome news from an excellent group of investigators. They will surely allow me to play devil’s advocate and caution two things. First, however enticing the cell biology might be, at this point it is a distraction. The question at hand is a genetic question, and to answer the genetics per se, the cell biology data is irrelevant. Unfortunately, journal editors often demand cell biology in genetics papers, even if it’s just an initial set of experiments.
Second, while many sample series were used, there is not an exact replication of the haplotypic association between the sample series, making these "replications," in my view, suspect. In this, the work resembles our own work (Li et al., 2006 and Grupe et al., 2006 on other risk genes). In these cases, too, we obtained multiple, but not entirely convincing replications.
Late-onset Alzheimer genetics is proving to be a very difficult problem. I personally doubt whether this is the new ApoE, but genuine attempts at replication will sort that out reasonably quickly.
View all comments by John Hardy
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Related News: SORLA Soars—Large Study Links Gene to Late-onset AD
Comment by: Rudy Tanzi (Disclosure)
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Submitted 15 January 2007
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Posted 15 January 2007
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Update: With regard to my earlier comment on the SORL1-AD genetic association study by Rogaeva et al, I initially commented that on the Alzgene list of "Top Alzgene Results", SORL1 ranked 12th out of 25 genes. (Ranking is based on effects of SNPs in the gene on risk for AD, with APOE at number 1).
Lars Bertram has now revised that ranking on the most updated "Top Alzgene Results" list:
SORL1 ranks 18th out of 27 genes listed on "Top Alzgene Results" that have statistically significant effects on AD risk following meta-analyses.
View all comments by Rudy Tanzi
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Related News: Stayin’ Alive—Huge Study Quickens Quest for Plasma AD Biomarker
Comment by: Masood Kamali-Moghaddam
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Submitted 2 October 2009
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Posted 2 October 2009
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The paper is well written and the study seems to be carried out very well, at least in regard to the data analysis. (Though an experimental scientist that I am, I was a bit surprised to see only half of the name of one of the used kits—the INNO-BIA kit—without further information on the experimental procedures.) In addition, the study is one of the biggest of its kind, and similar to the Rotterdam Study, although with different methodology.
Previously, different studies have reported increased Aβ1-40 and decreased Aβ1-42, and also decreased Aβ1-42/Aβ1-40 ratios in CSF, but there are conflicting data on the level of these Aβ species and the ratio of these species in blood.
Another striking thing is the decreased level of Aβ1-42 with progression of dementia (that has not been commented on in the paper), which is usually speculated to be due to absorption to the senile plaques in the brain. But some recent studies have demonstrated that this might depend on the methodology used. In an ELISA-based assay, the Aβ1-42 level is...
Read more
The paper is well written and the study seems to be carried out very well, at least in regard to the data analysis. (Though an experimental scientist that I am, I was a bit surprised to see only half of the name of one of the used kits—the INNO-BIA kit—without further information on the experimental procedures.) In addition, the study is one of the biggest of its kind, and similar to the Rotterdam Study, although with different methodology.
Previously, different studies have reported increased Aβ1-40 and decreased Aβ1-42, and also decreased Aβ1-42/Aβ1-40 ratios in CSF, but there are conflicting data on the level of these Aβ species and the ratio of these species in blood.
Another striking thing is the decreased level of Aβ1-42 with progression of dementia (that has not been commented on in the paper), which is usually speculated to be due to absorption to the senile plaques in the brain. But some recent studies have demonstrated that this might depend on the methodology used. In an ELISA-based assay, the Aβ1-42 level is decreased, while in a denaturing Western blot experiment, the level of Aβ1-42 is increased in the same model material.
The main part of the results in this paper conforms with the data from the Rotterdam Study, with some differences in the details, for instance, finding that the Aβ1-42/Aβ1-40 ratio in this study "may be associated with the risk of dementia only in individuals diagnosed at two years of follow-up," while in the case of the Rotterdam Study this time period is eight years. The current study has also included the measurement of other Aβ pieces (Aβn-40 and Aβn-42), which might shed light on some details.
Overall, my belief is that this paper, by confirming other well-done studies such as the Rotterdam Study, takes us one step closer to be convinced that blood Aβ might reflect brain and CSF Aβ. This, in turn, might take us to another level to try harder to detect and identify other toxic isomers of Aβ, such as Aβ oligomers in blood, which is a more non-invasive approach compared to the CSF. Of course, this might require that more powerful tools be developed and applied in the field. Having said that, I do not believe that the outcome of this paper will change the current situation and won't clarify much whether blood Aβ is a promising AD biomarker.
View all comments by Masood Kamali-Moghaddam
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Related News: Stayin’ Alive—Huge Study Quickens Quest for Plasma AD Biomarker
Comment by: Luc Buee, Susanna Schraen
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Submitted 13 October 2009
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Posted 13 October 2009
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First, we would like to thank Dr Kamali-Moghaddam for his comments. Regarding the methodology, we apologize about the name of the kit used which is not fully written (INNO-BIA plasma Aβ forms). The strength of such a study is the use of a commercially available kit. Thus, experimental procedures are the manufacturer’s instructions. We did not think that it was necessary to add them in the materials and methods. However, for Alzforum readers, here is the experimental procedure. All plasma samples were diluted 1/3 with a buffer containing detergent before analysis.
Quantification of Aβ isoforms in plasma was performed using INNO-BIA plasma Aβ forms assays (Innogenetics, Ghent, Belgium), a multiplex microsphere-based Luminex xMAP technique that allows simultaneous analysis of Aβ1-40 and Aβ1-42 (module A) an Aβn-40 and Aβn-42 (module B).
The monoclonal antibodies (MAbs) 21F12 and 2G3, which specifically bind Aβ peptides ending at 42 and 40, respectively, were used as capture antibodies. The capture MAbs were covalently coupled to...
Read more
First, we would like to thank Dr Kamali-Moghaddam for his comments. Regarding the methodology, we apologize about the name of the kit used which is not fully written (INNO-BIA plasma Aβ forms). The strength of such a study is the use of a commercially available kit. Thus, experimental procedures are the manufacturer’s instructions. We did not think that it was necessary to add them in the materials and methods. However, for Alzforum readers, here is the experimental procedure. All plasma samples were diluted 1/3 with a buffer containing detergent before analysis.
Quantification of Aβ isoforms in plasma was performed using INNO-BIA plasma Aβ forms assays (Innogenetics, Ghent, Belgium), a multiplex microsphere-based Luminex xMAP technique that allows simultaneous analysis of Aβ1-40 and Aβ1-42 (module A) an Aβn-40 and Aβn-42 (module B).
The monoclonal antibodies (MAbs) 21F12 and 2G3, which specifically bind Aβ peptides ending at 42 and 40, respectively, were used as capture antibodies. The capture MAbs were covalently coupled to carboxylated beads of different regions (region 104 for Aβ42;, region 105 for Aβ40;, and region 102 for a non-Aβ binding MAb). MAb 3D6, which specifically binds Aβ peptides starting at Asp1, and MAb 4G8 which react with all N-terminally truncated Aβ peptides up to Val18, were used as detector antibodies.
In short, Aβ isoforms ending either at Aβ40 or Aβ42 were selectively captured by beads that have been coated with either MAb 21F12 for Aβ42 or MAb 2G3 for Aβ40. A third class of beads was coated with MAb AT120, used to measure matrix effects due to heterophilic antibodies in the plasma sample. In module A, biotinylated MAb 3D6, which selectively binds Aβ peptides starting at Aβ1, is used as detector antibody, providing specific quantification of Aβ1-42 and Aβ1-40 isoforms. In module B, biotinylated MAb 4G8, which binds all N-terminally truncated Aβ peptides up to those starting at Aβ18, is used as detector antibody, providing specific quantification of Aβn-42 and Aβn-40 isoforms.
The procedure could be described as follows: after sonication and vortexing, a mixture (100 μL/well) of the beads (either Module A or B) were added to 96 well filter plates (Millipore Corporation, Bedford, Massachusetts). After draining the wells using a vacuum manifold (Millipore Corporation, Bedford, Massachusetts), standards, blanks, or diluted (1:3) plasma samples were added (75 μL/well) in duplicate together with the biotinylated detector MAb (25 μL/well) (MAb 3D6 for Module A and MAb 2G3 for Module B) and incubated overnight at 2-8ºC in the dark (plates covered with aluminum foil) on a plate shaker (600 rpm). After washing, phycoerythrine-labeled streptavidine was added (100 μL/well) and incubated for one hour on a plate shaker. After a second wash step, 100 μL of phosphate-buffered saline was added. The assays were analyzed on a Luminex 200 IS instrument (Luminex, Austin, Texas). For each set of microspheres, 100 beads were analyzed, and the median fluorescence intensity (MFI) was used for quantification.
A ready-to-use calibrator series is included in duplicate in each assay run and, using the calibration curve constructed with the median fluorescence values for each of the standards, concentrations were determined by sigmoidal curve fitting. Moreover, in each series two run-validation control samples are also included.
I hope that this is helpful.
View all comments by Luc Buee
View all comments by Susanna Schraen
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Related News: Lilly Halts IDENTITY Trials as Patients Worsen on Secretase Inhibitor
Comment by: P. Murali Doraiswamy (Disclosure)
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Submitted 18 August 2010
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Posted 18 August 2010
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First of all, kudos to Lilly and DSMB—they did the right thing to make this public as soon they knew. As a disclosure, I have been an advisor to and received grants from many companies, including Lilly.
The IDENTITY findings are not entirely unexpected, since I thought the Phase 1 studies didn't have a clear signal, and adverse effects on skin cells and the immune system were always a consideration with this class of drugs. The interim analyses suggest the trials likely would have been not only clearly negative, but also have potentially harmed patients, both in terms of progression and side effects. Since risks exceeded benefits, stopping the trial is the right thing to do. I hope Lilly plans to offer free follow-up to all subjects to fully understand the side effects and ensure proper aftercare and safety.
The billion-dollar questions on everyone's mind are whether this is a body blow to the amyloid theory and what this means for all the planned prevention trials using similar drugs. I think the amyloid theory is still valid, but this clearly tells us that our...
Read more
First of all, kudos to Lilly and DSMB—they did the right thing to make this public as soon they knew. As a disclosure, I have been an advisor to and received grants from many companies, including Lilly.
The IDENTITY findings are not entirely unexpected, since I thought the Phase 1 studies didn't have a clear signal, and adverse effects on skin cells and the immune system were always a consideration with this class of drugs. The interim analyses suggest the trials likely would have been not only clearly negative, but also have potentially harmed patients, both in terms of progression and side effects. Since risks exceeded benefits, stopping the trial is the right thing to do. I hope Lilly plans to offer free follow-up to all subjects to fully understand the side effects and ensure proper aftercare and safety.
The billion-dollar questions on everyone's mind are whether this is a body blow to the amyloid theory and what this means for all the planned prevention trials using similar drugs. I think the amyloid theory is still valid, but this clearly tells us that our current views may be too simple—clearing amyloid at a late stage without affecting tau might not suffice as a cognitive enhancing treatment. Other trials have told us this before, but this one really drives it home, since the results seem pretty unambiguous. One thing that worries me about these findings is that we don't know if this was a toxicity unique to Lilly's drug given to a late stage population or whether it also applies to similar anti-amyloid therapies give at earlier stages of the disease. There are several other anti-amyloid trials that are set to report in the next few months. These data are going to help us better understand how useful biomarkers are as surrogate endpoints in treatment trials. But in terms of biomarkers for accurate diagnosis, I don't think these data will have as much of an impact. Since we define AD (and preclinical AD) on the basis of pathology, we will continue to need amyloid and tau biomarkers for enhancing diagnostic accuracy, staging disease, and predicting future risk.
Negative studies can be very informative as long as people put aside their preconceived notions and actually listen to what the data are telling them. The IDENTITY dataset has the potential to really help the field as it moves to design studies targeting people with MCI or preclinical AD. So it will be a win-win if Lilly makes this entire trial dataset public (not just placebo data, but all data in the drug-treated arms) so others don't repeat the same mistakes over and over. I would also like to see the field pull together a conference (with experts from other areas such as decision science) to examine all the data from the dozen or so anti-amyloid trials done to date to ensure we are all seeing the correct big picture and to optimize the well-being of participants in future trials.
I look forward to seeing these data more fully, and my comments are to be interpreted in that context.
View all comments by P. Murali Doraiswamy
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Related News: Lilly Halts IDENTITY Trials as Patients Worsen on Secretase Inhibitor
Comment by: Bart De Strooper, ARF Advisor
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Submitted 18 August 2010
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Posted 18 August 2010
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Obviously, this is a serious disappointment. The negative effects on cognition and on the ability to complete activities of daily living are very bad news, and should raise questions about the usefulness of targeting γ-secretase for AD. However, this compound is not Notch sparing. The question is, To what extent Notch inhibition can explain the phenotype (Notch has been implicated in memory formation in mice and Drosophila). This needs close investigation, especially since the increase in skin cancer in the treated patients also suggests Notch signaling inhibition. The main conclusion is that there is apparently no such thing as a therapeutic window for classical γ-secretase inhibitors. The implication is that we should explore now, even more, Notch- (and other substrate-) sparing modulation of γ-secretase activity (e.g., blocking selectively Aph1B-γ-secretase). The other message, given the possibility that once Aβ has triggered tau pathology the disease becomes Aβ independent, is that we probably need to treat patients early, before Aβ...
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Obviously, this is a serious disappointment. The negative effects on cognition and on the ability to complete activities of daily living are very bad news, and should raise questions about the usefulness of targeting γ-secretase for AD. However, this compound is not Notch sparing. The question is, To what extent Notch inhibition can explain the phenotype (Notch has been implicated in memory formation in mice and Drosophila). This needs close investigation, especially since the increase in skin cancer in the treated patients also suggests Notch signaling inhibition. The main conclusion is that there is apparently no such thing as a therapeutic window for classical γ-secretase inhibitors. The implication is that we should explore now, even more, Notch- (and other substrate-) sparing modulation of γ-secretase activity (e.g., blocking selectively Aph1B-γ-secretase). The other message, given the possibility that once Aβ has triggered tau pathology the disease becomes Aβ independent, is that we probably need to treat patients early, before Aβ gets the chance to do its destructive work in the brain. Probably a more healthy brain will be more able to cope with the possible side effects of anti-amyloid drug as well. View all comments by Bart De Strooper
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Related News: Lilly Halts IDENTITY Trials as Patients Worsen on Secretase Inhibitor
Comment by: Christian Hoelscher
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Submitted 20 August 2010
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Posted 20 August 2010
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There is now a fair bit of evidence that γ-secretase inhibitors do cleave a number of additional growth factors and cause related side effects, not just on Notch signaling. I agree with the colleagues who point out that the negative effects of this “non-Notch sparing” γ-secretase inhibitor is not unexpected at all.
One issue is that we most likely do not even know all the substrates for γ-secretase, so that the development of “safe” inhibitors is questionable. It also would assume the existence of a wide range of different γ-secretases that are specific for only some of the substrates (e.g., only for APP) and have separate pharmacological profiles and can be inhibited individually. This does not seem very likely.
View all comments by Christian Hoelscher
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Related News: Lilly Halts IDENTITY Trials as Patients Worsen on Secretase Inhibitor
Comment by: Lon Schneider (Disclosure)
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Submitted 24 August 2010
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Posted 24 August 2010
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Semagacestat continues the streak of late-phase trial failures. All failed for lack of efficacy, but as enzyme inhibitors and antibodies are advanced, serious toxicity in the trials may become more frequent as well. Sequential failures discovered late in the drug development process are demoralizing, enervating, and may cause broad swaths of the community to lose interest. We should not have to enroll 2,000 to 4,000 patients in Phase 3 programs in order to discover that a drug is ineffective, the dose range is wrong, or that it is too toxic. In traditional drug development, large Phase 2b and 3 trials are considered confirmatory trials of efficacy and safety that were previously established in earlier proof-of-concept and dose-finding phases. Proof-of-concept studies sometimes are designed to demonstrate target engagement when there are validated drug targets for the illnesses. We don’t have validated targets in AD; rather we have lots of potential targets.
Current Phase 2a AD trials are either designed as mini-Phase 3 trials, with too few patients to meaningfully assess...
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Semagacestat continues the streak of late-phase trial failures. All failed for lack of efficacy, but as enzyme inhibitors and antibodies are advanced, serious toxicity in the trials may become more frequent as well. Sequential failures discovered late in the drug development process are demoralizing, enervating, and may cause broad swaths of the community to lose interest. We should not have to enroll 2,000 to 4,000 patients in Phase 3 programs in order to discover that a drug is ineffective, the dose range is wrong, or that it is too toxic. In traditional drug development, large Phase 2b and 3 trials are considered confirmatory trials of efficacy and safety that were previously established in earlier proof-of-concept and dose-finding phases. Proof-of-concept studies sometimes are designed to demonstrate target engagement when there are validated drug targets for the illnesses. We don’t have validated targets in AD; rather we have lots of potential targets.
Current Phase 2a AD trials are either designed as mini-Phase 3 trials, with too few patients to meaningfully assess efficacy, or as even smaller “pharmacodynamic” studies intended to show a particular, expected CNS effect. Semagacestat development used the latter pharmacodynamic model to justify its push to Phase 3, demonstrating effects on plasma Aβ, but not quite clearly on CSF Aβ, in a placebo-controlled, 14-week trial with 51 patients. (Its effect on Aβ might be considered evidence of target engagement if γ-secretase is a valid target for AD.)
By comparison, and as examples, tarenflurbil (Myriad and Lundbeck), bapineuzumab (Elan, Johnson & Johnson, and Pfizer), and scyllo-inositol (Elan and Transition) development programs used more of a “mini-Phase 3” approach, recruiting about 210 to 350 patients and treating from 1.0 to 1.5 years. None of these studies showed overall efficacy, but they were interpreted as showing potential efficacy in “subgroups,” and showing sufficient safety and enough dosing information that large Phase 3 programs involving 2,600 to 4,000 patients were undertaken or planned. So far, tarenflurbil failed Phase 3; the bapineuzumab program is ongoing but was modified; and a scyllo-insotitol trial is being planned. There are other examples as well.
Current development programs for AD drugs are not very efficient or effective. AD drug development is too consumptive of human capital to continue this way. There are too many plausible, candidate drugs for us to carry out Phase 3 after Phase 3 trial based on wisps of clinical evidence. How we do early human phase development, decide whether or not to advance drugs to later phases in MCI, AD or prevention, and how we do the later phase trials need to be re-conceptualized, but this is a hugely formidable endeavor.
Lilly and the ADCS, who conducted the early semagacestat study, understood the dilemma and the risks, as they presciently wrote in 2008:
“Given the slow rate of clinical progression in AD, we did not expect to see drug effects on measures of cognition or ADLs in this 14-week trial. Without this, a full risk-benefit assessment cannot be made. This trial sufficiently demonstrates that LY450139 can be tolerated, although not without risk. Given the potential for disease-modifying effects of this Aβ-lowering agent, and the arguably acceptable tolerance and safety profile of LY450139 demonstrated in this study, further large-scale efficacy trials are justified. Based, in part, on the results of this Phase 2 study, Eli Lilly & Co. launched a multinational Phase 3 trial in the second quarter of 2008, with an enrollment goal of 1,500 patients with AD.”
References: Fleisher, A. S., R. Raman, et al. (2008). Phase 2 Safety Trial Targeting Amyloid {beta} Production With a gamma-Secretase Inhibitor in Alzheimer Disease. Arch Neurol 65(8):1031-1038. Abstract
View all comments by Lon Schneider
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Related News: Lilly Halts IDENTITY Trials as Patients Worsen on Secretase Inhibitor
Comment by: Jochen Herms
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Submitted 1 September 2010
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Posted 1 September 2010
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The observed accelerated cognitive deterioration following γ-secretase inhibition could be due to toxic effects on synapses. By performing in vivo two-photon imaging, we have recently shown that dendritic spines (i.e., the post-synaptic side of excitatory synapses) get irreversibly lost in the cerebral cortex of wild-type mice after applying the Lilly drug (Bittner et al., 2009). By repeating the experiments in APP-deficient mice, we revealed evidence that APP-cleavage products (probably an accumulation of C-terminal fragments, as also suggested by Tom Fagan above) are critically involved.
References: Bittner T., Fuhrmann M., Burgold S., Jung C.K.E., Volbracht C., Steiner H., Mitteregger G., Kretzschmar H., Haass C. and Herms J. (2009) gamma-Secretase inhibition reduces spine density in vivo via an APP-dependent pathway. J Neurosci. 29:10405-10409. Abstract
View all comments by Jochen Herms
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Related News: Lilly Halts IDENTITY Trials as Patients Worsen on Secretase Inhibitor
Comment by: Hugo Geerts (Disclosure)
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Submitted 1 September 2010
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Posted 1 September 2010
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Negative outcomes in trials are always bad news, since patients don’t get access to new therapeutic interventions and we, as researchers, are forced to rethink our basic assumptions. Nevertheless, trials are an immensely rich resource that can lead to new knowledge about this disease. Congratulations to Lilly for committing to make these data public.
It will be of great interest to observe whether the patients can partially reverse their cognitive deficit after halting the medication in this trial. This could be a first indication whether the unintended effects of γ-secretase inhibition are real, irreversible toxicity issues (such as affecting other substrates, as suggested by other researchers), or merely a lowering of amyloid-β levels, which drives normal cognitive processes out of their optimal dose window, or a combination of the two. In this regard, it is interesting to consider the inverse U-shape response of glutamatergic functioning to amyloid-β (Abramov, 2009), which might modulate the balance between excitatory and inhibitory activity of brain...
Read more
Negative outcomes in trials are always bad news, since patients don’t get access to new therapeutic interventions and we, as researchers, are forced to rethink our basic assumptions. Nevertheless, trials are an immensely rich resource that can lead to new knowledge about this disease. Congratulations to Lilly for committing to make these data public.
It will be of great interest to observe whether the patients can partially reverse their cognitive deficit after halting the medication in this trial. This could be a first indication whether the unintended effects of γ-secretase inhibition are real, irreversible toxicity issues (such as affecting other substrates, as suggested by other researchers), or merely a lowering of amyloid-β levels, which drives normal cognitive processes out of their optimal dose window, or a combination of the two. In this regard, it is interesting to consider the inverse U-shape response of glutamatergic functioning to amyloid-β (Abramov, 2009), which might modulate the balance between excitatory and inhibitory activity of brain networks involved in cognitive aspects, such as working memory and executive control. The glutamatergic physiology is extremely tightly regulated, and too much reduction of amyloid-β could drive the system beyond its optimal point and change the emergent properties of the network sufficiently to be detected clinically.
This theory would predict that, after halting the medication, the cognitive deficit could be partially reversed and the degree of cognitive change would be correlated in a complex way to the change in amyloid-β level for each individual patient. This can readily be investigated in the database, although confounding parameters such as the baseline cognitive performance, different co-medications, and unknown genotypes need to be taken into account. Using well-calibrated, computer-based models of biophysically realistic, complex brain networks could be a way to address these issues, so that the valuable information from this trial can increase our knowledge on this devastating disease.
References: Abramov E, Dolev I, Fogel H, Ciccotosto GD, Ruff E, Slutsky I. Amyloid-beta as a positive endogenous regulator of release probability at hippocampal synapses. Nat Neurosci. 2009 Dec;12(12):1567-76. Abstract
View all comments by Hugo Geerts
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