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Sharp Look at Complement in Genetics of Macular Degeneration
1 September 2006. Last year, four independent research groups reported a linkage between polymorphisms in the complement factor H (CFH) gene to age-related macular degeneration (AMD), the most common cause of blindness in people over 60. One particular SNP, which changed a tyrosine (Y402) to histidine, was strongly associated with disease in all the studies.

The results seemed clear enough, but now a more extensive examination of variability in the region has yielded a different take on the genetics of AMD. In two papers in the August 27 online edition of Nature Genetics, researchers report finding additional CFH sequence variants that are even more strongly associated with the risk of AMD than the Y402H allele. One of the papers, from a group of Boston researchers led by Johanna Seddon at the Massachusetts Eye and Ear Infirmary, also confirms variants in two other genes that act additively with CFH to determine the risk of AMD in individuals.

While not directly relevant to Alzheimer disease, the findings provide a cautionary tale for researchers searching for the genetic risk factors of complex diseases like AD. Determining genetic risk is an exceedingly complicated proposition, the study indicates, and finding all the risk alleles for common diseases will likely involve a thorough analysis of hundreds or thousands of cases.

In the study from the Seddon group, first author Julian Maller worked together with Mark Daly and colleagues at the Broad Institute of Harvard and MIT to survey 1,536 SNPs over three genes in more than 2,000 people (1,238 affected individuals and 934 controls). Unexpectedly, the strongest disease association they found within the CFH gene was not the previously observed Y402H SNP, but an intronic SNP that did not affect protein sequence.

To complicate matters even more, further SNP typing by Seddon and colleagues confirmed a second AMD locus on chromosome 10, and showed that two gene variants there were strongly associated with AMD. They also found two SNPs in a second complement-related locus, this one containing the gene for complement component 1 and complement factor B (C2/CFB). The five SNPs in three genes acted in additive fashion to increase the risk of AMD from less than 1 percent in people with the lowest-risk genotypes at each SNP, to more than 50 percent for those with five risky SNPs. Mixed genotypes of high- and low-risk SNPs displayed intermediate risk, forming a gradient of risk in the population. Finally, the authors estimated that the five common variants explain half the excess risk of AMD in siblings of affected individuals.

In the second paper, from Goncalo Abecasis and Anand Swaroop of the University of Michigan at Ann Arbor, a similarly intensive survey of SNPs in the CFH gene in 762 affected people and 268 controls turned up 20 polymorphisms that showed stronger association than Y402H. In this study, led by first author Mingyao Li, no single SNP accounted for disease susceptibility, but instead they found multiple SNPs making up four common haplotypes, two associated with increased risk, and two that were protective.

In both studies, the CFH variant showing the strongest association was an SNP in a non-coding region, raising questions of what change it would cause in the carrier. One possibility is that the variants affect complement factor H gene expression. Alleles that change a gene’s expression level without altering protein structure have been implicated in several other neurodegenerative diseases, revealing an increasing role for regulatory polymorphisms (see ARF related news story).

“Our results show that dissection of complex disease susceptibility loci will be a challenging process and that identification of strongly associated alleles, even when they are protein coding, should not preclude further detailed genetic analysis,” write Abecasis and Swaroop. They call for careful studies not just of SNP association, but of regional DNA sequence and gene expression patterns to get a full understanding of the contribution of the CFH gene.

Beyond the genetics lesson, could the role of complement in AMD also have something to teach us about AD? Resulting from the loss of retinal ganglion cells required for vision, AMD is a form of neurodegeneration. A role for the complement cascade was not suspected in the disease until the genetic association was made, but since then much work has cemented the idea that the macula is destroyed by complement-stimulated inflammatory and/or angiogenic processes. Complement activation and inflammation occur in AD, possibly because of Aβ production. (For more on the AD-complement angle, see comments below by Ben Barres and Tony Wyss-Coray on the potential roles of complement in AD neuropathology.) Recently, it was found that the characteristic protein deposits (Drusen) that mark AMD contain nonfibrillar amyloid (Luibl et al., 2006), making yet another intriguing link between AMD and AD pathology.—Pat McCaffrey.

References:
Maller J, George S, Purcell S, Fagerness J, Altshuler D, Daly MJ, Seddon JM. Common variation in three genes, including a noncoding variant in CFH, strongly influences risk of age-related macular degeneration. Nat Genet. 2006 Aug 27; [Epub ahead of print] Abstract

Li M, Atmaca-Sonmez P, Othman M, Branham KE, Khanna R, Wade MS, Li Y, Liang L, Zareparsi S, Swaroop A, Abecasis GR. CFH haplotypes without the Y402H coding variant show strong association with susceptibility to age-related macular degeneration. Nat Genet. 2006 Aug 27; [Epub ahead of print] Abstract

 
Comments on News and Primary Papers
  Comment by:  Tony Wyss-Coray
Submitted 1 September 2006  |  Permalink Posted 1 September 2006

Complement is activated in most forms of neurodegeneration and in AD in particular. Aβ aggregates (the particular conformation of which is ill-defined) can activate complement and may trigger the clearance of Aβ in solution via C3bi and complement receptors (Mac1/CR3) on microglia. Similarly, tangle ghosts may be a trigger for complement activation.

It has also been suggested that injured cells or possibly Aβ aggregates bound to cell surfaces lead to activation of complement. This cell-bound activation of complement could lead to formation of the membrane attack complex (MAC) and further damage of cells, although studies in oligodendrocytes show that the MAC, which is a membrane pore, can also induce protective pathways in cells.

Factor H is involved in the regulation of the alternative complement pathway and may influence any of the above activities. If Factor H does indeed have a role in the degeneration of cells in the eye, it may have a similar role in the hippocampus and cortex as well. At this point, however, there is little hard evidence from in-vivo studies to...  Read more


  Comment by:  Ben Barres, ARF Advisor
Submitted 1 September 2006  |  Permalink Posted 1 September 2006

The Complement System and Age-related Macular Degeneration: What Does It Teach Us about Alzheimer Disease?
Age-related macular degeneration (AMD) and Alzheimer disease (AD) are both neurodegenerative diseases of aging, with loss of photoreceptors and CNS neurons, respectively. A number of recent studies have shown that polymorphisms of several complement proteins in the alternative pathway of complement activation (CFB, C2, and CFH) enhance susceptibility to AMD. Somewhat similarly, in AD there is a profound increase in the levels of the initiating protein of the complement cascade called C1q, a prominent upregulation of which has also recently been reported to accompany glaucoma, which is a neurodegenerative retinal disease of aging. All of these changes, in AMD and AD, ultimately lead to activation of the pivotal complement protein called C3. Upon activation, C3 is fragmented into several pieces. One is called C3a, a small cytokine-like molecule that activates microglia and stimulates angiogenesis, whereas a larger fragment, called C3b, opsonizes the cell or debris...  Read more

  Comment by:  Carmela Abraham
Submitted 4 September 2006  |  Permalink Posted 5 September 2006

The complement system plays important roles not only in the neurodegeneration seen in AD and AMD, but also during normal brain aging. We reported that the activation of the early components of the complement appears to target myelin and oligodendrocytes in the aged rhesus monkey brain. Interestingly, the complement activation was also observed in the young brain, but to a much lesser extent. These findings suggest that only an exaggerated complement activation is detrimental, but that low-level activation may be physiologic and could be crucial for the turnover of myelin (Duce et al., 2006.)

References:
Duce, JA, Hollander, W, Jaffe, R. and Abraham, CR. (2006) Early complement activation targets myelin and oligodendrocytes in the aged rhesus monkey brain. Neurobiol Aging. 27:633-644.

View all comments by Carmela Abraham

  Comment by:  Andrea Tenner
Submitted 7 September 2006  |  Permalink Posted 9 September 2006

There is considerable data suggesting that complement plays a role in the progression of AD, including an animal model that we published in 2004. In that study, Tg2576 animals (APP) were crossed with C1q-deficient mice to effectively eliminate activation of the classical pathway of complement. The pathology of APPQ-/- was compared with that of APP mice and B6SJL controls at 3-16 months of age by immunohistochemistry and Western blot analysis. While at younger ages (3-6 months) when no plaque pathology was present, no significant differences were seen; at older ages (12 and 16 months), the level of activated glia surrounding the plaques was significantly lower in the APPQ-/- mice. In addition, although Tg2576 mice showed a progressive decrease in synaptophysin and MAP2 in the CA3 area of hippocampus compared with control B6SJL at 9, 12, and 16 months, the APPQ-/- mice had significantly less of a decrease in these markers at 12 and 16 months. Interestingly, the APP and APPQ-/- mice developed comparable total amyloid and fibrillar β amyloid in frontal cortex and hippocampus. ...  Read more

  Comment by:  Amanda Myers
Submitted 9 September 2006  |  Permalink Posted 9 September 2006

Besides providing further evidence that the complement cascade is involved in neurodegeneration, these articles have broader implications for the field of genetics and disease mapping. Through a combination of linkage mapping (1-5) and association studies (6-8), the original reports declared that a tyrosine-to-histidine substitution at position 402 accounted for 20-50 percent of the overall risk of developing age-related macular degeneration (AMD). However, in the current reports, the coding change does not appear to have the largest effect. This has two implications for the field of neurogenetics. First, that it should not be assumed that examining single coding changes in genes is sufficient. With the recent boom in whole genome studies, this should no longer be as much of a problem for the field. But it does suggest that perhaps a re-examination of current association results is in order. Alzgene reports that after meta-analysis of 341 genes, 20 variants in 13 genes are significant. Approximately one-third...  Read more
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