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Promoter Bashing—Mitochondrial Ones Damaged in AD Brain
8 July 2004. Recently, scientists reported that certain human promoter sequences are more susceptible to age-related mutagenesis, suggesting that these somatic mutations may underlie many diseases of the elderly, including neurodegenerative disorders such as Alzheimer’s (see ARF related news story). Well, nuclear promoters may not be alone. In this week’s PNAS online, Douglas Wallace and Pinar Coskun at the University of California, Irvine, together with Flint Beal at Cornell University, New York, report that mutations in promoter regions of mitochondrial DNA are more common in people with AD.

The control region (CR) of the mitochondrial genome is the business end of this relatively small piece of DNA. Here, in just over 1,000 bases, reside several promoters, transcription factor binding sites, conserved sequence blocks (CSBs), and origins of replication. When Coskun tested postmortem frontal cortex samples, he found a higher incidence of CR mutations in samples taken from AD donors as compared to those from controls. This difference was statistically significant and was greater in older patients. Among those 80 and above, CR mutations were nearly 2.5 times higher in AD samples.

Could these mutations contribute to AD pathology—and how? Hints come from the location of the mutations. Not only are there more of them in AD samples, but they are also in more critical regions of the CR. In control samples, for example, most of the mutations occur between nucleotides 1 and 200, while most of the known functional sequences lie between nucleotides 200 and 570, which is where most of the AD sample mutations were. In CSB I, for example, Coskun found seven mutations in AD samples but none in control samples. Similar results were found for other key binding sites. The mutations may also affect mitochondrial number, and hence overall cellular fitness, because many of the mutations occurred in proximity to the PL region, a section of the genome that is necessary for transcription of the mitochondrial L-strand. As L-strand transcription is thought to be essential for replication of the genome, these mutations may prevent mitochondrial reproduction. In support of this, the authors found a 50 percent reduction in mtDNA copy number in AD samples.

These results also seem to point the finger, yet again, at reactive oxygen species (ROS) and mitochondrial damage as key players in neurodegeneration. “Once [CR] mutations arise,” write the authors, “they would become enriched in the postmitotic cells of the brain and ultimately result in mitochondrial oxidative phosphorylation deficiency, increased ROS production, activation of the mitochondrial permeability transition pore in the synaptic mitochondria, and loss of synaptic connections through apoptosis.—Tom Fagan.

Reference:
Coskun PE, Beal MF, Wallace DC. Alzheimer brains harbor somatic mtDNA control-region mutations that suppress mitochondrial transcription and replication. PNAS 2004 July 5. Early online edition. Abstract

 
Comments on News and Primary Papers
  Comment by:  Michael Leski
Submitted 11 July 2004  |  Permalink Posted 12 July 2004

This is a remarkable paper. Coskun, Beal and Wallace demonstrate that many mutations to mtDNA occur near the PL region, an important regulatory region for replication of the genome. Therefore, this damage could ultimately block mitochondrial reproduction. In support of this possibility, they found a 50 percent reduction in mtDNA copy number in AD samples. Thus, their results partially explain the mitochondrial deficiencies that occur in AD.

Mitochondria constantly undergo fission and fusion, are replicated throughout the life of the cell, and autophagocytosed when their time has come. However, unlike their host, mitochondria possess multiple copies of their DNA, perhaps four or five. So, damage to one copy does not necessarily compromise the organelle, if it can be removed and disposed. That’s the catch-if the mitochondrion does not get rid of this DNA, eventually it may accrue more damaged copies.

The mitochondrial theory of aging states that enlarged and functionally disabled mitochondria gradually displace normal ones during senescence. These changes are most...  Read more


  Comment by:  David Stern, Shirley ShiDu Yan
Submitted 11 August 2004  |  Permalink Posted 11 August 2004

A possible role for abnormal mitochondrial biology in the pathogenesis of Alzheimer’s disease (AD) has been an omnipresent theme over the last decades. Regional hypometabolism, documented by positron emission tomography and abnormalities in mitochondrial respiratory chain complexes—most consistently diminished activity of cytochrome c oxidase (COX), have been noted for some time (1-2). Furthermore, an important role for reactive oxygen species (ROS), which originate, at least in part, from mitochondria, in amyloid-β peptide (Aβ)-induced cellular perturbation has been indicated by multiple in vitro studies. In this regard, an attractive concept to consider is that of “retrograde signaling,” whereby mitochondrial generation of ROS diminishes calcium uptake by this organelle, resulting in increased oxidant stress and cytosolic-free calcium ([Ca2+]c), and subsequent activation of kinases, and activation of nuclear genes etc (3). Another close link between cellular perturbation, apoptosis and mitochondrial function is that a 75 kDa subunit of respiratory complex I (NDUFS1) is a...  Read more

  Primary Papers: Alzheimer's brains harbor somatic mtDNA control-region mutations that suppress mitochondrial transcription and replication.

Comment by:  Anatol Kontush
Submitted 25 August 2004  |  Permalink Posted 26 August 2004

Etiology of late-onset Alzheimer’s disease (AD) is unknown; the paper of Coskun et al. [1] lends further support to an exciting hypothesis that it may be caused by somatic mutations in mtDNA. Mitochondria have long been known as a major source of reactive oxygen species (ROS) in actively metabolic cells; AD appears to most strongly affect brain regions with the highest metabolic rate and highest expression of mitochondrial enzymes. Thus, defects in mitochondrial oxidative phosphorylation and increased generation of ROS by defective mitochondria might mediate the relationship between late-onset AD and mtDNA mutations.

At a first glance, this mechanism is only relevant to the development of late-onset AD and seems to be unrelated to early-onset forms of the disease which are caused by point mutations in APP and presenilins; such mutations result in accelerated production of amyloid-β (Aβ). Thus, the question of major importance remains, how can we combine late-onset and early-onset AD within such mitochondrial hypothesis? Increased production of Aβ is a probable...  Read more


  Primary Papers: Alzheimer's brains harbor somatic mtDNA control-region mutations that suppress mitochondrial transcription and replication.

Comment by:  Kazuhiro Honda, Quan Liu, Paula Moreira, George Perry, ARF Advisor (Disclosure), Mark A. Smith (Disclosure), Xiongwei Zhu
Submitted 26 August 2004  |  Permalink Posted 27 August 2004

Mitochondria and Alzheimer’s Disease: A Complex Interrelationship
Recently, Coskun and colleagues (2004) reported that brains from patients with Alzheimer's disease (AD) present somatic mtDNA control-region mutations, especially in individuals older than 80 years, which supports the mitochondrial hypothesis for AD pathophysiology. However, the doubt remains whether these somatic mtDNA mutations are the cause or consequence of AD pathophysiology. If somatic mutations of mtDNA are a cause of AD, these mutations should appear in the vulnerable brain regions affected by the disease. However, this same pattern will be also observed if the somatic mutation of mtDNA is a consequence of AD pathophysiology. So, how and when do the somatic mutations of mtDNA accumulate in specific regions of brain?

A recent study suggests that DNA damage, recognized by the formation of 8-hydroxyguanosine (8OHG), a marker of nucleic acid oxidation, is markedly increased in the promoters of genes whose expression is decreased in the aged human cortex (Lu et al., 2004). Since modifications of...  Read more

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